View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_high_37 (Length: 395)

Name: NF18678_high_37
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_high_37
NF18678_high_37
[»] chr5 (1 HSPs)
chr5 (10-296)||(12037104-12037395)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 12037395 - 12037104
Alignment:
Q  10 ataatactgtattcaaaaactgatggattagtgctctggtaattaggagaatggaagaagaagatactactacttcatattgtgcttttccattatctgg 109  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12037395 ataatactatattcaaaaactgatggattggtgctctggtaattaggagaatggaagaagaagatactactacttcatattgtgcttttccattatctgg 12037296  T
Q  110 atttaatcaataaactataaaaatagattagattaaattg-----tgatttattagttgttaattgatgatgatattgataatccaacaacaaagcgtga 204  Q
    |||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12037295 atttaatcaataaactataaaaatagattagattaaattaaattatgatttattagttgttaattgatgatgatattgataatccaacaacaaagcgtga 12037196  T
Q  205 tcagtgatttcaactacttgcttgctggccatctaattttaaattagttttgattgccgcgtaacgtctgtaactcttagtctagtaccatt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  12037195 tcagtgatttcaactacttgcttgctggccatctaattttaaattagttttgattgccgcgtaacgtgggtaactcttagtctagtaccatt 12037104  T

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