View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_high_41 (Length: 362)

Name: NF18678_high_41
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_high_41
NF18678_high_41
[»] chr6 (7 HSPs)
chr6 (13-344)||(1231212-1231543)
chr6 (297-341)||(8420112-8420157)
chr6 (301-341)||(33027706-33027746)
chr6 (309-338)||(9911802-9911831)
chr6 (297-338)||(33737680-33737721)
chr6 (290-338)||(8010460-8010508)
chr6 (303-335)||(27909565-27909597)
[»] chr7 (7 HSPs)
chr7 (299-337)||(34464141-34464179)
chr7 (300-336)||(34463919-34463955)
chr7 (300-338)||(19624290-19624328)
chr7 (300-337)||(47941421-47941458)
chr7 (290-338)||(6977519-6977567)
chr7 (300-336)||(18765397-18765433)
chr7 (306-338)||(20526565-20526597)
[»] chr4 (15 HSPs)
chr4 (290-340)||(55870259-55870309)
chr4 (295-340)||(23339217-23339262)
chr4 (290-336)||(19305029-19305075)
chr4 (300-338)||(32071976-32072014)
chr4 (297-343)||(32765006-32765052)
chr4 (300-338)||(52169939-52169977)
chr4 (297-338)||(1561986-1562027)
chr4 (309-338)||(7297661-7297690)
chr4 (308-341)||(10172183-10172216)
chr4 (309-338)||(22796777-22796806)
chr4 (296-333)||(25583701-25583738)
chr4 (309-345)||(20935936-20935972)
chr4 (309-341)||(31851571-31851603)
chr4 (300-336)||(37636107-37636143)
chr4 (295-339)||(54575521-54575565)
[»] scaffold0388 (1 HSPs)
scaffold0388 (307-340)||(8746-8779)
[»] chr1 (5 HSPs)
chr1 (301-338)||(4868513-4868550)
chr1 (300-338)||(26184856-26184894)
chr1 (306-340)||(37617382-37617416)
chr1 (295-336)||(30257792-30257833)
chr1 (297-345)||(48748507-48748555)
[»] chr3 (7 HSPs)
chr3 (300-340)||(40294795-40294835)
chr3 (300-339)||(20210846-20210885)
chr3 (295-338)||(20874230-20874273)
chr3 (300-338)||(25447164-25447202)
chr3 (300-338)||(30657399-30657437)
chr3 (297-334)||(27792982-27793019)
chr3 (300-336)||(26911704-26911740)
[»] chr2 (5 HSPs)
chr2 (302-338)||(7103392-7103428)
chr2 (300-338)||(8017547-8017585)
chr2 (300-337)||(40059381-40059418)
chr2 (300-337)||(40085281-40085318)
chr2 (309-341)||(37419583-37419615)
[»] chr5 (4 HSPs)
chr5 (306-337)||(20458290-20458321)
chr5 (300-337)||(9107203-9107240)
chr5 (297-338)||(36796626-36796667)
chr5 (302-338)||(35299880-35299916)
[»] chr8 (4 HSPs)
chr8 (300-341)||(1096603-1096644)
chr8 (300-337)||(4560615-4560652)
chr8 (297-338)||(8060778-8060819)
chr8 (309-338)||(40357050-40357079)


Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 1231543 - 1231212
Alignment:
Q  13 atgaataatggtgaaatcatgtagattcctctagtttttcttaataaagcatatcgcgaagcaagaagtgacaatcctgcatgtactgaatgggaagagc 112  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1231543 atgaataatggtgaaatcatgtagattcctctagtttttctcaataaagcatatcacgaagcaagaagtgacaatcctgcatgtactgaatgggaagagc 1231444  T
Q  113 aaggtttgttccactccacatggattttgtcaatgatcttctcttctcttttgttgtgattcattcgtcttcacaattctttgcagctttggggtgaaat 212  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1231443 aagatttgttccactccacatggattttgtcaatgatcttctcttctcttttgttgtgattcattcgtcttcacaattcttggcagctttggggtgaaat 1231344  T
Q  213 tcacagttatagctttacgcaaatgtgaactcgttttgaaaacttagttcattgcacgaattcgtgctatctcttaatcactaatgtttatgtcaataga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  1231343 tcacagttatagctttacgcaaatgtgaactcgttttgaaaacttagttcattgcacgaattcgtgcaatctcttaatcactgatgtttatgtcaataga 1231244  T
Q  313 taaactcaaataaatcaatccaaacatgctct 344  Q
    ||||||||||||||||||||||||||||||||    
T  1231243 taaactcaaataaatcaatccaaacatgctct 1231212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 8420157 - 8420112
Alignment:
Q  297 tgtttatgtcaatagataaactcaaataaa-tcaatccaaacatgc 341  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  8420157 tgtttatgtcaatagataagctcaaataaagtcaatccaaacatgc 8420112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 341
Target Start/End: Original strand, 33027706 - 33027746
Alignment:
Q  301 tatgtcaatagataaactcaaataaatcaatccaaacatgc 341  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  33027706 tatgtcagtagataagctcaaataaatcaatccaaacatgc 33027746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Complemental strand, 9911831 - 9911802
Alignment:
Q  309 tagataaactcaaataaatcaatccaaaca 338  Q
    ||||||||||||||||||||||||||||||    
T  9911831 tagataaactcaaataaatcaatccaaaca 9911802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 33737680 - 33737721
Alignment:
Q  297 tgtttatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||    
T  33737680 tgtttatgtcaatagataaactcgaataagtcattccaaaca 33737721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 8010460 - 8010508
Alignment:
Q  290 tcactaatgtttatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    |||| |||||||||| |||||||||| |||| |||| ||||||||||||    
T  8010460 tcacaaatgtttatgccaatagataagctcacataagtcaatccaaaca 8010508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 27909597 - 27909565
Alignment:
Q  303 tgtcaatagataaactcaaataaatcaatccaa 335  Q
    ||||||||||||| |||||||||||||||||||    
T  27909597 tgtcaatagataagctcaaataaatcaatccaa 27909565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 299 - 337
Target Start/End: Complemental strand, 34464179 - 34464141
Alignment:
Q  299 tttatgtcaatagataaactcaaataaatcaatccaaac 337  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34464179 tttatgtcaatagataaactcaaataaatcaatccaaac 34464141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 34463955 - 34463919
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaa 336  Q
    |||||| ||||||||||||||||||||||||||||||    
T  34463955 ttatgttaatagataaactcaaataaatcaatccaaa 34463919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 19624290 - 19624328
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  19624290 ttatgtcaatagataaactcaaataagtcaagccaaaca 19624328  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 47941421 - 47941458
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaac 337  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  47941421 ttatgtcagtagataaactcaaataaaccaatccaaac 47941458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 6977519 - 6977567
Alignment:
Q  290 tcactaatgtttatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    |||| |||| ||||| |||||||||||||| ||||| ||||||||||||    
T  6977519 tcacaaatgcttatgccaatagataaactctaataagtcaatccaaaca 6977567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 18765397 - 18765433
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaa 336  Q
    |||||||||||||||| |||||||||| |||||||||    
T  18765397 ttatgtcaatagataagctcaaataaagcaatccaaa 18765433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 20526565 - 20526597
Alignment:
Q  306 caatagataaactcaaataaatcaatccaaaca 338  Q
    |||||||||||||||||||| ||||||||||||    
T  20526565 caatagataaactcaaataagtcaatccaaaca 20526597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 55870309 - 55870259
Alignment:
Q  290 tcactaatgtttatgtcaatagataaactcaaataaatcaatccaaacatg 340  Q
    |||| ||||||||||||| ||||||||||||||||| | ||||||||||||    
T  55870309 tcacaaatgtttatgtcattagataaactcaaataagttaatccaaacatg 55870259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 23339262 - 23339217
Alignment:
Q  295 aatgtttatgtcaatagataaactcaaataaatcaatccaaacatg 340  Q
    |||||||| |||| ||||||||||||||||||| ||||||||||||    
T  23339262 aatgtttacgtcagtagataaactcaaataaattaatccaaacatg 23339217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 19305029 - 19305075
Alignment:
Q  290 tcactaatgtttatgtcaatagataaactcaaataaatcaatccaaa 336  Q
    |||| |||| |||||||||||||||| ||||||||| ||||||||||    
T  19305029 tcacaaatgcttatgtcaatagataatctcaaataagtcaatccaaa 19305075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 32071976 - 32072014
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  32071976 ttatgtcaatagataaactcaaataagtcagtccaaaca 32072014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 32765006 - 32765052
Alignment:
Q  297 tgtttatgtcaatagataaactcaaataaatcaatccaaacatgctc 343  Q
    ||||||||||| |||||||||||| ||||  ||||||||||||||||    
T  32765006 tgtttatgtcactagataaactcatataaggcaatccaaacatgctc 32765052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 52169977 - 52169939
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  52169977 ttatgtaaatagataaactcaaataagtcaatccaaaca 52169939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 1561986 - 1562027
Alignment:
Q  297 tgtttatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    ||||||| | ||||||||||||||||||||| ||||||||||    
T  1561986 tgtttatattaatagataaactcaaataaattaatccaaaca 1562027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 7297661 - 7297690
Alignment:
Q  309 tagataaactcaaataaatcaatccaaaca 338  Q
    ||||||||||||||||||||||||||||||    
T  7297661 tagataaactcaaataaatcaatccaaaca 7297690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 10172183 - 10172216
Alignment:
Q  308 atagataaactcaaataaatcaatccaaacatgc 341  Q
    |||||||| |||||||||||||||||||||||||    
T  10172183 atagataagctcaaataaatcaatccaaacatgc 10172216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 22796777 - 22796806
Alignment:
Q  309 tagataaactcaaataaatcaatccaaaca 338  Q
    ||||||||||||||||||||||||||||||    
T  22796777 tagataaactcaaataaatcaatccaaaca 22796806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 333
Target Start/End: Original strand, 25583701 - 25583738
Alignment:
Q  296 atgtttatgtcaatagataaactcaaataaatcaatcc 333  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  25583701 atgtttatgtcagaagataaactcaaataaatcaatcc 25583738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 20935972 - 20935936
Alignment:
Q  309 tagataaactcaaataaatcaatccaaacatgctctt 345  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  20935972 tagataagctcaaataaaccaatccaaacatgctctt 20935936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 31851571 - 31851603
Alignment:
Q  309 tagataaactcaaataaatcaatccaaacatgc 341  Q
    ||||||||||| |||||||||||||||||||||    
T  31851571 tagataaactcgaataaatcaatccaaacatgc 31851603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Complemental strand, 37636143 - 37636107
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaa 336  Q
    |||||| | ||||||||||||||||||||||||||||    
T  37636143 ttatgttagtagataaactcaaataaatcaatccaaa 37636107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 54575565 - 54575521
Alignment:
Q  295 aatgtttatgtcaatagataaactcaaataaatcaatccaaacat 339  Q
    |||| ||||||| ||| |||||||||||||| |||||||||||||    
T  54575565 aatgcttatgtctataaataaactcaaataagtcaatccaaacat 54575521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 340
Target Start/End: Complemental strand, 8779 - 8746
Alignment:
Q  307 aatagataaactcaaataaatcaatccaaacatg 340  Q
    ||||||||||||||||||||||||||||||||||    
T  8779 aatagataaactcaaataaatcaatccaaacatg 8746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 4868513 - 4868550
Alignment:
Q  301 tatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    |||||||||||||||| |||||||||||||||||||||    
T  4868513 tatgtcaatagataaattcaaataaatcaatccaaaca 4868550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 26184856 - 26184894
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  26184856 ttatgtcaatagaaaaactcaaataagtcaatccaaaca 26184894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 340
Target Start/End: Complemental strand, 37617416 - 37617382
Alignment:
Q  306 caatagataaactcaaataaatcaatccaaacatg 340  Q
    |||||||||||||||||||| ||||||||||||||    
T  37617416 caatagataaactcaaataagtcaatccaaacatg 37617382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 30257792 - 30257833
Alignment:
Q  295 aatgtttatgtcaatagataaactcaaataaatcaatccaaa 336  Q
    ||||||||||||| ||||||||||||||||| | ||||||||    
T  30257792 aatgtttatgtcagtagataaactcaaataagtaaatccaaa 30257833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 345
Target Start/End: Complemental strand, 48748555 - 48748507
Alignment:
Q  297 tgtttatgtcaatagataaactcaaataaatcaatccaaacatgctctt 345  Q
    ||||||||||||| ||||| ||||||||| ||||| ||||||| |||||    
T  48748555 tgtttatgtcaatggataagctcaaataagtcaattcaaacatactctt 48748507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 40294795 - 40294835
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaacatg 340  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  40294795 ttatgtcaataaataaactcaaataaatcaatctaaacatg 40294835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 339
Target Start/End: Complemental strand, 20210885 - 20210846
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaacat 339  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  20210885 ttatgtcagtagataacctcaaataaatcaatccaaacat 20210846  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 20874273 - 20874230
Alignment:
Q  295 aatgtttatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    ||||||||||||| || |||||||||||||| ||||||||||||    
T  20874273 aatgtttatgtcattatataaactcaaataagtcaatccaaaca 20874230  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Complemental strand, 25447202 - 25447164
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  25447202 ttatgtcagtagataaactcaaataagtcaatccaaaca 25447164  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 30657399 - 30657437
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  30657399 ttatgtcagtagataaactcaaataaatcaattcaaaca 30657437  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 27792982 - 27793019
Alignment:
Q  297 tgtttatgtcaatagataaactcaaataaatcaatcca 334  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  27792982 tgtttatgtcaatagataagctcaaataaaccaatcca 27793019  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 336
Target Start/End: Original strand, 26911704 - 26911740
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaa 336  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  26911704 ttatgtcagtagataaactcaaataagtcaatccaaa 26911740  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 7103428 - 7103392
Alignment:
Q  302 atgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    |||||||||||||||||||||||| ||||||||||||    
T  7103428 atgtcaatagataaactcaaataagtcaatccaaaca 7103392  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 8017547 - 8017585
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  8017547 ttatgtcaatagataacctcaaataagtcaatccaaaca 8017585  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 40059418 - 40059381
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaac 337  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  40059418 ttatgtcagtagataaactcaaataagtcaatccaaac 40059381  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 40085318 - 40085281
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaac 337  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  40085318 ttatgtcagtagataaactcaaataagtcaatccaaac 40085281  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 37419615 - 37419583
Alignment:
Q  309 tagataaactcaaataaatcaatccaaacatgc 341  Q
    ||||||||||||||||| |||||||||||||||    
T  37419615 tagataaactcaaataagtcaatccaaacatgc 37419583  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 337
Target Start/End: Original strand, 20458290 - 20458321
Alignment:
Q  306 caatagataaactcaaataaatcaatccaaac 337  Q
    ||||||||||||||||||||||||||||||||    
T  20458290 caatagataaactcaaataaatcaatccaaac 20458321  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 9107203 - 9107240
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaac 337  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  9107203 ttatgtcactagataaactcaaataagtcaatccaaac 9107240  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 36796667 - 36796626
Alignment:
Q  297 tgtttatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||    
T  36796667 tgtttatgtcattagataagctcaaataagtcaatccaaaca 36796626  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 338
Target Start/End: Original strand, 35299880 - 35299916
Alignment:
Q  302 atgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  35299880 atgtcaatagataagctcaaataagtcaatccaaaca 35299916  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 1096603 - 1096644
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaacatgc 341  Q
    |||||||| || |||||||||||||| |||||||||||||||    
T  1096603 ttatgtcactaaataaactcaaataagtcaatccaaacatgc 1096644  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 337
Target Start/End: Original strand, 4560615 - 4560652
Alignment:
Q  300 ttatgtcaatagataaactcaaataaatcaatccaaac 337  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  4560615 ttatgtcaatagataagctcaaataagtcaatccaaac 4560652  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 8060778 - 8060819
Alignment:
Q  297 tgtttatgtcaatagataaactcaaataaatcaatccaaaca 338  Q
    ||||||||||||||||||  ||||||||| ||||||||||||    
T  8060778 tgtttatgtcaatagatatgctcaaataagtcaatccaaaca 8060819  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 338
Target Start/End: Original strand, 40357050 - 40357079
Alignment:
Q  309 tagataaactcaaataaatcaatccaaaca 338  Q
    ||||||||||||||||||||||||||||||    
T  40357050 tagataaactcaaataaatcaatccaaaca 40357079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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