View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_high_47 (Length: 323)
Name: NF18678_high_47
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 44063567 - 44063271
Alignment:
| Q |
17 |
aattacttcatgtttaaactcttatttaacatatatatacagataaggcattgtgcggtggaaatgatgaatactatttcttcgccaaagtgaaggaaaa |
116 |
Q |
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| T |
44063567 |
aattacttcatgtttaaactcttatttaacatatatatacagataaggcattgtgcggtggaaatgatgaatactatttcttcgccaaagtgaaggaaaa |
44063468 |
T |
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| Q |
117 |
taaatccagtactgagaatgggcattgggaggaaattggtgtgacagtaccaatattttcaggcactgaccagaaagtgggaatgaagaagtacctatta |
216 |
Q |
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| T |
44063467 |
taaatccagtactgagaatgggcattgggaggaaattggtgtgacagtaccaatattttcaggcactgaccagaaagtgggaatgaagaagtacctatta |
44063368 |
T |
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| Q |
217 |
ttccacattggcgaattagcacaaagttctgaaacaagttgggtaatgcaagaatatcatatttgctccactggatttgatcaaagtactgtttcat |
313 |
Q |
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| T |
44063367 |
ttccacattggcgaattagcacaaagttttgaaacaagttgggtaatgcaagaatatcatatttgctccactggatttgatcaaagtactgtttcat |
44063271 |
T |
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Back To:
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 280
Target Start/End: Complemental strand, 39241746 - 39241712
Alignment:
| Q |
246 |
tgaaacaagttgggtaatgcaagaatatcatattt |
280 |
Q |
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| T |
39241746 |
tgaaacaagttgggtaatggaagaatatcatattt |
39241712 |
T |
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