View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_high_52 (Length: 309)
Name: NF18678_high_52
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 67 - 277
Target Start/End: Original strand, 41993078 - 41993292
Alignment:
| Q |
67 |
ttctttagcttcttcctttgattcatggtggggtgtaaatagctgacgacttggatattatgggagagtgtaacannnnnnnnnncacgggtagctagcc |
166 |
Q |
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| T |
41993078 |
ttctttagcttcttcctttgattcatggtggggtgtaaatagctgacggcttggatattatgggagagtgtaacattttttttttcacgggtagctagcc |
41993177 |
T |
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| Q |
167 |
tttatgtacatccgaatatcaatgaattatatcaatcaatgatt----aacgatatcaattttgtctcaaagtctattttgctcttgatattctctgctt |
262 |
Q |
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| T |
41993178 |
tttatgtacatccgaatatcaatgaattatatcaatcaatgattaacgaacgatatcaattttgtctcaaagtccattttgctcttgatattctctgctt |
41993277 |
T |
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| Q |
263 |
caatttctcctttca |
277 |
Q |
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| T |
41993278 |
caatttctcctttca |
41993292 |
T |
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