View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_high_57 (Length: 276)
Name: NF18678_high_57
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_high_57 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 10284461 - 10284688
Alignment:
| Q |
15 |
gatcatactcttagctgttggatcaatatttaatattagcaagtttatttcctttcctaacaactaccacaacaagagtcaaaggccaaaaacacaagat |
114 |
Q |
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| T |
10284461 |
gatcatactcttatctgttggatcaatatttaatattagcacgtttatttcctttcctaacaactaccacatcaaaagtcaaaggccaaaaacacaagat |
10284560 |
T |
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| Q |
115 |
caatgttttgttttgtgaacccagaaagttgataaaaatgaagcacacgagtcataatcagaatagatagatagatagttagttggtgctctcctatcag |
214 |
Q |
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| T |
10284561 |
caatgttttgttttgtgaacccagaaagttgataaaaatgaagcacatgagtcataatcagaatagatagatagatagttagtt---------------- |
10284644 |
T |
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| Q |
215 |
tatcactactgtttttcaataaatatagttgaagttgtgatggc |
258 |
Q |
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| T |
10284645 |
tatcactactgtttttcaataaatatagttgaagttgtgatggc |
10284688 |
T |
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