View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18678_high_65 (Length: 253)
Name: NF18678_high_65
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_high_65 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 30626291 - 30626039
Alignment:
| Q |
1 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgtcatcgtgcagaagcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
30626291 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttt |
30626192 |
T |
|
| Q |
101 |
tctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaagatttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
30626191 |
tctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctattcttgaacaacatgtaagaatcttgacaagatttc |
30626092 |
T |
|
| Q |
201 |
ggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttgtagct |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30626091 |
ggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttgtagct |
30626039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 30663242 - 30662990
Alignment:
| Q |
1 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgtcatcgtgcagaagcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30663242 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttt |
30663143 |
T |
|
| Q |
101 |
tctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaagatttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
30663142 |
tctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctacgcttgaacaacatgtaagaatcttgacaagatttc |
30663043 |
T |
|
| Q |
201 |
ggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttgtagct |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30663042 |
ggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttgtagct |
30662990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 30671922 - 30671670
Alignment:
| Q |
1 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgtcatcgtgcagaagcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30671922 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgttatcgtgcagaagcttt |
30671823 |
T |
|
| Q |
101 |
tctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaagatttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
30671822 |
tctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatctacgcttgaacaacatgtaagaatcttgacaagatttc |
30671723 |
T |
|
| Q |
201 |
ggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttgtagct |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30671722 |
ggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttgtagct |
30671670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 35367080 - 35366833
Alignment:
| Q |
1 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgtcatcgtgcagaagcttt |
100 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||| || ||| ||||||||||||||||| |||||||| |||||| ||| |||||||||||| |
|
|
| T |
35367080 |
aagataatcgagtgcatgagctacatcaagagcaatgtcaactctgtgtctgaggctgagattatgatttccagacccttcgttatcatgcagaagcttt |
35366981 |
T |
|
| Q |
101 |
tctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaagatttc |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || || |||||||||||||||| |
|
|
| T |
35366980 |
tctagacttcccttaggcatgaactcaaaaacaatagccttgaactcttcacccttataatcaatgcttgaacaacaagttaggatcttgacaagatttc |
35366881 |
T |
|
| Q |
201 |
ggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttg |
248 |
Q |
| |
|
|||||||||||||||| | ||||| ||||| ||| |||||||||||| |
|
|
| T |
35366880 |
ggtgcttcatctttcctagagcttcacattctgctttgaaactctttg |
35366833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 35410893 - 35410645
Alignment:
| Q |
1 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgtcatcgtgcagaagcttt |
100 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||| | ||||||||||||| ||||||||||| || ||||| |||||| ||| |||| || |||| |
|
|
| T |
35410893 |
aagataatcaagtgcatgagctacatcaagagcaatgtctaacctttgtgtgaggttgagattatgattttcagacccttcgttatcatgcaaaaacttt |
35410794 |
T |
|
| Q |
101 |
tctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaagatttc |
200 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| || || || ||||||||||| | |
|
|
| T |
35410793 |
tctagattcccattaggcattaactcaaaaacaatagccttgaactcttcaccattataatcaacacttgaacaacacgttaggattttgacaagattac |
35410694 |
T |
|
| Q |
201 |
ggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttgt |
249 |
Q |
| |
|
||||| ||||||||| ||||| |||||||| || ||||||||||||| |
|
|
| T |
35410693 |
ggtgcctcatctttcttaaagcattgcattccgccatgaaactctttgt |
35410645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 35755034 - 35754786
Alignment:
| Q |
1 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgtcatcgtgcagaagcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| | |||| ||| |||| | |||||||| | |||| |
|
|
| T |
35755034 |
aagataatccaatgcatgagctacatcaagagcaatgtctaacctttgtgtgaggttgagattaaaatttcctgacccttcattatcgtgcaacaacttt |
35754935 |
T |
|
| Q |
101 |
tctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaagatttc |
200 |
Q |
| |
|
|| |||||||| || | ||||||||||||||||||||| ||||| || ||||| |||||||||| |||||||||||| || | ||||||||||||||| | |
|
|
| T |
35754934 |
tcaagactcccatttgacatgaactcaaaaacaatagctttgaaatcttcaccattataatcaacacttgaacaacaagttaaaatcttgacaagattcc |
35754835 |
T |
|
| Q |
201 |
ggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttgt |
249 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||| ||||||| ||||| |
|
|
| T |
35754834 |
ggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgt |
35754786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 35386232 - 35385985
Alignment:
| Q |
1 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgtcatcgtgcagaagcttt |
100 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||| || ||||| |||| | || ||||| || |||| |
|
|
| T |
35386232 |
aagataatcaagtgcatgagctacatcaagagcaatgtctaacctttatgtgaggttgagattatgattttcagacccttcattattgtgcaaaaacttt |
35386133 |
T |
|
| Q |
101 |
tctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaagatttc |
200 |
Q |
| |
|
|| |||||| | || | ||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||| || || | |||||||||||| |
|
|
| T |
35386132 |
tcaagactctcatttgacatgaactcaaaaacaatagccttgaaatcttcacccttataatcaacacttgaacaacaggttaggaccttgacaagattct |
35386033 |
T |
|
| Q |
201 |
ggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttg |
248 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| || |||||||||||| |
|
|
| T |
35386032 |
ggtgcttcatctttcccagagcattgcattctgccatgaaactctttg |
35385985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 35376632 - 35376379
Alignment:
| Q |
1 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactc------ttcgtcatcgtgcaga |
94 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| | ||||||||||| ||||||| || ||| |||||| ||||| | | |||| |
|
|
| T |
35376632 |
aagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaac |
35376533 |
T |
|
| Q |
95 |
agcttttctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaa |
194 |
Q |
| |
|
|| ||||| ||| |||| |||||||||||||||||||||| ||||| || || ||||| |||||||||| |||||||||||| || || || ||||||| |
|
|
| T |
35376532 |
aggttttccagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacaacaagttaggattttgacaa |
35376433 |
T |
|
| Q |
195 |
gatttcggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttg |
248 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||| || |||||||||||| |
|
|
| T |
35376432 |
gattacggtgcttcatctttcctaaagcattgcattccgcaatgaaactctttg |
35376379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 35423891 - 35423638
Alignment:
| Q |
1 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactc------ttcgtcatcgtgcaga |
94 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| | ||||||||||| ||||||| || ||| |||||| ||||| | | |||| |
|
|
| T |
35423891 |
aagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattgagattcagatttctagactcatgatcttcgttaccatgcaac |
35423792 |
T |
|
| Q |
95 |
agcttttctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaa |
194 |
Q |
| |
|
|| ||||||||| |||| |||||||||||||||||||||| ||||| || || ||||| |||||||||| ||||||||| || || || || || |||| |
|
|
| T |
35423791 |
aggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcaccattataatcaacacttgaacagcaagttaggattttcacaa |
35423692 |
T |
|
| Q |
195 |
gatttcggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttg |
248 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |||||||| | |||||||||||| |
|
|
| T |
35423691 |
gattacggtgcttcatctttcctaaagcattgcattccaccatgaaactctttg |
35423638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 229
Target Start/End: Complemental strand, 35370370 - 35370238
Alignment:
| Q |
98 |
ttttctagactccccttaggcatgaactcaaaaacaatagccttg-aactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaaga |
196 |
Q |
| |
|
||||||| |||||| || ||||||||||||||||||||||||||| ||||| ||||| |||||||||| |||||| ||||| || || || ||||||||| |
|
|
| T |
35370370 |
ttttctaaactcccattgggcatgaactcaaaaacaatagccttggaactcttcaccattataatcaacacttgagcaacacgttaggattttgacaaga |
35370271 |
T |
|
| Q |
197 |
tttcggtgcttcatctttcccaaagctttgcat |
229 |
Q |
| |
|
|| |||||| |||||||||| ||||| |||||| |
|
|
| T |
35370270 |
ttacggtgcctcatctttcctaaagcattgcat |
35370238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 35437134 - 35437060
Alignment:
| Q |
100 |
ttctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaaca |
174 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| ||||||||||| | ||||| |||||||||||||||||||| |
|
|
| T |
35437134 |
ttctagactccccataggcatgaattcaaaaactatagccttgaaaacttcaccattataatcaatacttgaaca |
35437060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 10420556 - 10420791
Alignment:
| Q |
13 |
tgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgtcatcgtgcagaagcttttctagactcccc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| |
|
|
| T |
10420556 |
tgcatgagctacatcaagagcaatgtcaaccctttgtctgaggctgagattatgaattccagacccttctttatcgtgcagaagcttttctagactcccc |
10420655 |
T |
|
| Q |
113 |
ttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaagatttcggtgcttcatct |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || || ||||||||||| |||||||| ||||||| |
|
|
| T |
10420656 |
ttaggcatgaactcaaaaacaatagccttgaactcttcacccttataatcaacgcttgaacaacaagttaggatcttgacaaggtttcggtgtttcatct |
10420755 |
T |
|
| Q |
213 |
ttcccaaagctttgcattcagctgtgaaactctttg |
248 |
Q |
| |
|
|||| | ||||| || ||| ||| |||||||||||| |
|
|
| T |
10420756 |
ttcctagagcttcgcgttctgctttgaaactctttg |
10420791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 10415657 - 10415904
Alignment:
| Q |
1 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgtcatcgtgcagaagcttt |
100 |
Q |
| |
|
||||||||| | ||||||||||| ||||||||| ||||| | |||||||| |||||||||||||||||||||||| |||||| ||||||||||| |||| |
|
|
| T |
10415657 |
aagataatcaagtgcatgagctagatcaagagcgatgtctaacctttgtgccaggctgagattatgaattccagacccttcgttatcgtgcagaatcttt |
10415756 |
T |
|
| Q |
101 |
tctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaagatttc |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||| || || || ||||||||||| | |
|
|
| T |
10415757 |
tccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttaggattttgacaagattac |
10415856 |
T |
|
| Q |
201 |
ggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttg |
248 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| | |||||||||||| |
|
|
| T |
10415857 |
ggtgcttcatctttcctaaagcattgcattcctccatgaaactctttg |
10415904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10409960 - 10410196
Alignment:
| Q |
1 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactc---ttcgtcat---cgtgcaga |
94 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||| | ||||||||||| ||||||| || ||| |||||| ||| | || | |||| | |
|
|
| T |
10409960 |
aagataatccaatgcatgagctacgttgagaacaatgtctaacctttgtgtgaaattgagattcagatttctagactcgtgttctttattaccatgcaaa |
10410059 |
T |
|
| Q |
95 |
agcttttctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaa |
194 |
Q |
| |
|
|| ||||| | |||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||| || || ||||| |||| |
|
|
| T |
10410060 |
aggttttccaaactcccattaggcatgaactcaaaaacaatagccttgaaatcttcacctttataatcaacacttgaacaacaagttaggatcttaacaa |
10410159 |
T |
|
| Q |
195 |
gatttcggtgcttcatctttcccaaagctttgcattc |
231 |
Q |
| |
|
|||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
10410160 |
gattccggtgcttcatgtttcccagagctttgcattc |
10410196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 29623098 - 29623345
Alignment:
| Q |
1 |
aagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgtcatcgtgcagaagcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||| |||| | |||||||| | |||| |
|
|
| T |
29623098 |
aagataatccaatgcatgagctacatcaagagcaatgtctatcctttgtgtgaggttgagattatggcttccagatccttcattatcgtgcaacatcttt |
29623197 |
T |
|
| Q |
101 |
tctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaagatttc |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||| || || |||||||||||||| | |
|
|
| T |
29623198 |
tctagactcatattaggcatgaactcaaaaacaatagccttgaaatcttcacctttataatcaacacttgaacaacaagttaggatcttgacaagattcc |
29623297 |
T |
|
| Q |
201 |
ggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttg |
248 |
Q |
| |
|
|||| ||||||||||| | || ||| ||||| || |||||||||||| |
|
|
| T |
29623298 |
ggtgtttcatctttcctagagatttacattctgcaatgaaactctttg |
29623345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 97 - 246
Target Start/End: Complemental strand, 13564754 - 13564605
Alignment:
| Q |
97 |
cttttctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaaga |
196 |
Q |
| |
|
|||||||||||| || |||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | | ||||||||| ||| || |
|
|
| T |
13564754 |
cttttctagactaccattagacatgaactcaaaaacaatagccttgaaatcgtcacccttattatcaatacttgaacattaaggaagaatcttaacacga |
13564655 |
T |
|
| Q |
197 |
tttcggtgcttcatctttcccaaagctttgcattcagctgtgaaactctt |
246 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
13564654 |
tttcggtgcttcatctttcctaaagctttgcattcagccgtaaaactctt |
13564605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 28605679 - 28605599
Alignment:
| Q |
118 |
catgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaacatgtaagaatcttgacaagatt |
198 |
Q |
| |
|
|||| |||||||||| | ||| ||||| || | ||| || ||||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
28605679 |
catgtactcaaaaactaaagctttgaattcattaccattgtaatccatacttgaacaacatgttaaaatcttgacaagatt |
28605599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 1153954 - 1153790
Alignment:
| Q |
13 |
tgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagattatgaattccagactcttcgtcatcgtgcagaagcttttctagactcccc |
112 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||| |||||| ||||||| ||| || ||||| |||| ||| |||| | ||||||||||||||| |
|
|
| T |
1153954 |
tgcatgagctatatcaagagcaaaatctaccctttttgtgagcttgagattgtgattttcagacccttcaatatcatgcaacatcttttctagactcccg |
1153855 |
T |
|
| Q |
113 |
ttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatcaatacttgaacaaca |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| || ||||||||||||| ||||| |
|
|
| T |
1153854 |
ttaggcatgaactcaaaaacaatagccttgaaatcttcacctttgcaatcaatacttgagcaaca |
1153790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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