View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_high_70 (Length: 245)
Name: NF18678_high_70
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_high_70 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 11378096 - 11377878
Alignment:
| Q |
16 |
agaagcatggttagggaaagaaaggatttaagcatgattcaagactgattgaggagcaaaatatgaagatttttctgcctatttatcgcgcacggttgtg |
115 |
Q |
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| T |
11378096 |
agaagcatggttagggaaagaaaggatttaagcatgattcaaggctgactgaggagcaaaatatgaagatttttctgcctatttatcgcgcacggtcgtg |
11377997 |
T |
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| Q |
116 |
cctgccactgcactgacggtgcacccctgttaccaaaccatgtgccacaacgtcgagagctgcgcacggtctgtgctcagctacacacggccatgcgcga |
215 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
11377996 |
cctgccactgcactgaccgtgcacccctgttaccaaaccatgtgccacaacgccgagagctgcacacggtctgtgctcagctacacacggccgtgcgcga |
11377897 |
T |
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| Q |
216 |
ttccagtactccctatgct |
234 |
Q |
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||| |||||||||| |||| |
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| T |
11377896 |
ttctagtactccctttgct |
11377878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 22432530 - 22432623
Alignment:
| Q |
16 |
agaagcatggttagggaaagaaaggatttaagcatgattcaagactgattgaggagcaaaatatgaagatttttctgcctatttatcgcgcacgg |
110 |
Q |
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| T |
22432530 |
agaagcatggttaaggaaagaaaggattctagcatgatttaaggttgattgaagagcaaaatataaagatctct-tgcctttttatcgcgcacgg |
22432623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 29951329 - 29951384
Alignment:
| Q |
161 |
cacaacgtcgagagctgcgcacggtctgtgctcagctacacacggccatgcgcgat |
216 |
Q |
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| T |
29951329 |
cacaatgtcgagagctgcgcacagtctatgctcagctacgcacggccatgcgcgat |
29951384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 13004084 - 13004153
Alignment:
| Q |
16 |
agaagcatggttagggaaagaaaggatttaagcatgattcaagactgattgaggagcaaaatatgaagat |
85 |
Q |
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||||||||||||| |||||||||||| |||||| ||||| | ||||||||||| ||||||||||||| |
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| T |
13004084 |
agaagcatggttaaataaagaaaggattcaagcataattcatggttgattgaggagaaaaatatgaagat |
13004153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 29956220 - 29956269
Alignment:
| Q |
167 |
gtcgagagctgcgcacggtctgtgctcagctacacacggccatgcgcgat |
216 |
Q |
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| T |
29956220 |
gtcgagagctgcgcacggtccgtgctcagctacgcatggccgtgcgcgat |
29956269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 25034834 - 25034777
Alignment:
| Q |
20 |
gcatggttagggaaagaaaggatttaagcatgattcaagactgattgaggagcaaaata |
78 |
Q |
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| T |
25034834 |
gcatggttaaggaaagaaaggattcaagcatgattcatggctgattga-gagcaaaata |
25034777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 17522867 - 17522798
Alignment:
| Q |
16 |
agaagcatggttagggaaagaaaggatttaagcatgattcaagactgattgaggagcaaaatatgaagat |
85 |
Q |
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||||||||||||| ||||||||| ||| |||||||||||| | ||||| ||||| ||||||||||||| |
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| T |
17522867 |
agaagcatggttaaggaaagaaatgatccaagcatgattcatggttgattaaggagaaaaatatgaagat |
17522798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 14826240 - 14826309
Alignment:
| Q |
16 |
agaagcatggttagggaaagaaaggatttaagcatgattcaagactgattgaggagcaaaatatgaagat |
85 |
Q |
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||||||||||||| ||||| ||||||| || ||| || || | ||||||||||| |||||||||||||| |
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| T |
14826240 |
agaagcatggttaaggaaataaaggatccaaacatcatccatggctgattgaggaacaaaatatgaagat |
14826309 |
T |
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