View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_high_8 (Length: 611)
Name: NF18678_high_8
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 230 - 569
Target Start/End: Complemental strand, 46751816 - 46751477
Alignment:
| Q |
230 |
aagaaagacagcaggtggtgggaagaagacaagtcatttttaaaacggttaccaaacatatacaactacattctcaaaattcaattcctttcatacaaaa |
329 |
Q |
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| T |
46751816 |
aagaaagacagcaggtggtgggaagaagacaagtcaattttaaaacggttaccaaacatatacaactacattctcaaaattcaattcctttcatacaaaa |
46751717 |
T |
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| Q |
330 |
acaaaacattacaagacatggatataagagcaaaagtatatgacaactctcaatgccaacaaattatcatactccatagtgaatcagactgcgatgagca |
429 |
Q |
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| T |
46751716 |
acaaaacattacaagacatggatataagagcaaaagtatatgacaactctcaatgccaacaaattatcacactccatagtgaatcagactgcgatgagcc |
46751617 |
T |
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| Q |
430 |
ttcagttcgatggtaagagtttgattttattttattatatacgagataatcgtaaaatgattattagttagtattgtcgttattaataataatttta--- |
526 |
Q |
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| T |
46751616 |
gtcagttcgatggtaagagtttgattt-----tattatatacgagataatcgtaaaatgattattagttagtattgtcgttattaataataattttaatt |
46751522 |
T |
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| Q |
527 |
--annnnnnnncatcccggcctttaaaaaatgtgattgagaatgg |
569 |
Q |
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| T |
46751521 |
ttaatttttttcatcccggcctttaaaaaatgtgattgagaatgg |
46751477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 9e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 12356306 - 12356109
Alignment:
| Q |
13 |
ggagcacagactgtagattgaaacagtagatcgtgagatcttctcatcggtggggggt-gaaggtggaagactatgttggttgtctgcaattgaattgcg |
111 |
Q |
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| T |
12356306 |
ggagcagagactgtagatcgaaacagtagattgtgagatcttctcatcggtgggggggagaaggtggaagactatgttggttgtctgcaattgaattgcg |
12356207 |
T |
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| Q |
112 |
tgaggcgcatgttgtgagagaggttgaacagaacaggtgcgtctccagtggctggtggtcgacggatgaactcagacctatgaaagagagatagtggt |
209 |
Q |
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| T |
12356206 |
tgaggcgcatgttgtgagagaggttgaacagaacaggtgcgtctctagtggctggtggtcggcggatgaactcagacctgtgaaagagagattgtggt |
12356109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 9397833 - 9397867
Alignment:
| Q |
34 |
aacagtagatcgtgagatcttctcatcggtggggg |
68 |
Q |
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| T |
9397833 |
aacagtagatcgtgagatcttctcgtcggtggggg |
9397867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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