View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_high_83 (Length: 209)

Name: NF18678_high_83
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_high_83
NF18678_high_83
[»] chr2 (1 HSPs)
chr2 (17-189)||(8020816-8020988)
[»] chr3 (17 HSPs)
chr3 (28-191)||(28151632-28151795)
chr3 (28-152)||(17744491-17744615)
chr3 (28-152)||(19045811-19045935)
chr3 (28-170)||(28149970-28150112)
chr3 (28-189)||(11420972-11421133)
chr3 (28-189)||(28037423-28037584)
chr3 (28-153)||(27954347-27954471)
chr3 (75-171)||(27458885-27458981)
chr3 (28-124)||(28161925-28162021)
chr3 (34-153)||(8539262-8539381)
chr3 (28-124)||(28185968-28186064)
chr3 (28-153)||(27920262-27920389)
chr3 (61-170)||(27776525-27776634)
chr3 (28-105)||(28479860-28479937)
chr3 (28-105)||(28509043-28509120)
chr3 (105-170)||(28056547-28056612)
chr3 (105-170)||(28066972-28067037)
[»] scaffold0257 (1 HSPs)
scaffold0257 (31-171)||(19079-19219)
[»] scaffold0922 (1 HSPs)
scaffold0922 (28-94)||(1819-1885)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 8020988 - 8020816
Alignment:
Q  17 agaagaaggttaacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactag 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020988 agaagaaggttaacttcaaaatgaaaagggcgatgagataacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactag 8020889  T
Q  117 tttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctat 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020888 tttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctat 8020816  T

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Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 28151795 - 28151632
Alignment:
Q  28 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 127  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  28151795 aacttcaaaataaaaagggcgatgaggtaacttaagaaaataaaagcgatccaaagattcttcaccttgatcatcattagtgttactagtttcctgccag 28151696  T
Q  128 atttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctattg 191  Q
    |||||||||||||||||||||||||||| ||||||||||||| | |||| |||| |||||||||    
T  28151695 atttcaacatcaacatcttgagtggttacaggctttgttatgtcaattggagtataagctattg 28151632  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 17744491 - 17744615
Alignment:
Q  28 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 127  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| || |||| | || |||||||| || |||||||||||||||    
T  17744491 aacttcaaaatgaaaagagcgatgaggtaacttaagaaaataaaatcgatccaaagattttttaccttggtcatcattagtctttctagtttcctgccag 17744590  T
Q  128 atttcaacatcaacatcttgagtgg 152  Q
    |||||||||||||||||||||||||    
T  17744591 atttcaacatcaacatcttgagtgg 17744615  T

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Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 19045811 - 19045935
Alignment:
Q  28 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 127  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| || |||| | || |||||||| || |||||||||||||||    
T  19045811 aacttcaaaatgaaaagagcgatgaggtaacttaagaaaataaaatcgatccaaagattttttaccttggtcatcattagtctttctagtttcctgccag 19045910  T
Q  128 atttcaacatcaacatcttgagtgg 152  Q
    |||||||||||||||||||||||||    
T  19045911 atttcaacatcaacatcttgagtgg 19045935  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 170
Target Start/End: Complemental strand, 28150112 - 28149970
Alignment:
Q  28 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 127  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||  ||||| |||| ||||||||| |||| |||||||||||||||||||||||| ||    
T  28150112 aacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatcctaagactcttcaccttgatcatcattagtgttactagtttcctgcaag 28150013  T
Q  128 atttcaacatcaacatcttgagtggttagaggctttgttatgg 170  Q
     | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28150012 ttattaacatgaacttcttgagtggtaagaggccttgttatgg 28149970  T

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Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 11421133 - 11420972
Alignment:
Q  28 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 127  Q
    |||||| |||||||||||| ||||  |||||||||||||| ||||| |||||||||| || |||||| |||| |||||||  |||||||||||||| |||    
T  11421133 aacttctaaatgaaaagggtgatgtcgtaacttaagaaaataaaactgatccaaagagtcatcaccttgatcatcattagccttactagtttcctgacag 11421034  T
Q  128 atttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctat 189  Q
    |||| |||||||||||||||| ||||   ||||||||||||||| |||  || |||||||||    
T  11421033 attttaacatcaacatcttgaatggtagcaggctttgttatggcaatttgaggagaagctat 11420972  T

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Target: chr3; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 28037584 - 28037423
Alignment:
Q  28 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 127  Q
    ||||||||||||||||||| ||||||||||||| |||||| || || |||||||||| |||| |||| || | ||||||||||||||||||||  |||||    
T  28037584 aacttcaaaatgaaaagggtgatgaggtaactttagaaaataacactgatccaaagagtctttaccttgaccatcattagtgttactagtttcgcgccag 28037485  T
Q  128 atttcaacatcaacatcttgagtggttagaggctttgttatggcgattgaagtagaagctat 189  Q
     |||  | ||||||||||| |||||| | ||||||||||||||  ||||||| |||||||||    
T  28037484 tttttgagatcaacatcttcagtggtaacaggctttgttatggtaattgaaggagaagctat 28037423  T

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Target: chr3; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 27954471 - 27954347
Alignment:
Q  28 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccag 127  Q
    ||||||||||||||||||  |||||||||||||| ||||| || ||  ||||||||| | ||||||| |||| |||||||||||||||||||||||||||    
T  27954471 aacttcaaaatgaaaaggt-gatgaggtaacttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgttactagtttcctgccag 27954373  T
Q  128 atttcaacatcaacatcttgagtggt 153  Q
    |||| | ||||||||| |||||||||    
T  27954372 attttatcatcaacatattgagtggt 27954347  T

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Target: chr3; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 27458885 - 27458981
Alignment:
Q  75 gatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatggc 171  Q
    |||||||||| ||||||||| |||| || ||||| || ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  27458885 gatccaaagagtcttcaccttgatcatccttagtcttgctagtttcctgccagattttaacatcaacatcttgagtggtaagaggctttgttatggc 27458981  T

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Target: chr3; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 28162021 - 28161925
Alignment:
Q  28 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgc 124  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||  |||||||||| ||||||||| |||| ||||||||||||||||||||||||    
T  28162021 aacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcattagtgttactagtttcctgc 28161925  T

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Target: chr3; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 8539262 - 8539381
Alignment:
Q  34 aaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttca 133  Q
    ||||||||||||| ||  |||||||||||||||| ||||| ||||||| |||||||||||| |||    |||||||||||||||||||||||| | || |    
T  8539262 aaaatgaaaagggtgacaaggtaacttaagaaaataaaactgatccaaggattcttcaccttgattaatattagtgttactagtttcctgccaaagttta 8539361  T
Q  134 acatcaacatcttgagtggt 153  Q
    ||||||||||||||||||||    
T  8539362 acatcaacatcttgagtggt 8539381  T

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Target: chr3; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 28186064 - 28185968
Alignment:
Q  28 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgc 124  Q
    ||||||||||||||||||| |||||| ||||||||||||| ||||  |||||||||| ||||||||| |||| |||| |||||||||||||||||||    
T  28186064 aacttcaaaatgaaaagggtgatgagataacttaagaaaataaaattgatccaaagagtcttcaccttgatcatcatcagtgttactagtttcctgc 28185968  T

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Target: chr3; HSP #12
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 27920389 - 27920262
Alignment:
Q  28 aacttcaaaatgaaaagggcgatgaggtaa---cttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgc 124  Q
    ||||||||||||||||||  ||||||||||   |||| ||||| || ||  ||||||||| | ||||||| |||| ||||||||||||||||||||||||    
T  27920389 aacttcaaaatgaaaaggt-gatgaggtaattgcttatgaaaacaacactaatccaaagagttttcaccttgatcatcattagtgttactagtttcctgc 27920291  T
Q  125 cagatttcaacatcaacatcttgagtggt 153  Q
    ||||||| | ||||||||| |||||||||    
T  27920290 cagattttatcatcaacatattgagtggt 27920262  T

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Target: chr3; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 61 - 170
Target Start/End: Complemental strand, 27776634 - 27776525
Alignment:
Q  61 aagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggc 160  Q
    ||||||| ||||  |||||||||| | ||||||| |||  |||||||| ||||||||||||||| || |||||||||||||||||||||| ||  |||||    
T  27776634 aagaaaataaaattgatccaaagagttttcaccttgatgatcattagtcttactagtttcctgcaagttttcaacatcaacatcttgagtagtaggaggc 27776535  T
Q  161 tttgttatgg 170  Q
    ||||||||||    
T  27776534 tttgttatgg 27776525  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 28479860 - 28479937
Alignment:
Q  28 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcatt 105  Q
    |||||||||||| |||||| |||||||||| ||||||||| ||||  |||||||||| ||||||||| |||| |||||    
T  28479860 aacttcaaaatgcaaagggtgatgaggtaaattaagaaaataaaattgatccaaagagtcttcaccttgatcatcatt 28479937  T

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Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 28509043 - 28509120
Alignment:
Q  28 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcatt 105  Q
    |||||||||||| |||||| |||||||||| ||||||||| ||||  |||||||||| ||||||||| |||| |||||    
T  28509043 aacttcaaaatgcaaagggtgatgaggtaaattaagaaaataaaattgatccaaagagtcttcaccttgatcatcatt 28509120  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 28056612 - 28056547
Alignment:
Q  105 tagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatgg 170  Q
    |||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28056612 tagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatgg 28056547  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 28067037 - 28066972
Alignment:
Q  105 tagtgttactagtttcctgccagatttcaacatcaacatcttgagtggttagaggctttgttatgg 170  Q
    |||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| |||||||||    
T  28067037 tagtgttactagtttcctgcaagttattaacatgaacttcttgagtggtaagaggccttgttatgg 28066972  T

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Target: scaffold0257 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 19219 - 19079
Alignment:
Q  31 ttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacctcgatcgtcattagtgttactagtttcctgccagatt 130  Q
    |||||||||||||||| |||||||||||||||||||| || |  |||||||||| ||||||||| |||| ||| || ||||||||||||||||| || |     
T  19219 ttcaaaatgaaaagggtgatgaggtaacttaagaaaataatattgatccaaagagtcttcaccttgatcatcaataatgttactagtttcctgcaagtta 19120  T
Q  131 tcaacatcaacatcttgagtggttagaggctttgttatggc 171  Q
    | ||||||||||||||||||||| |||||||||||||||||    
T  19119 ttaacatcaacatcttgagtggtaagaggctttgttatggc 19079  T

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Target: scaffold0922 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 1885 - 1819
Alignment:
Q  28 aacttcaaaatgaaaagggcgatgaggtaacttaagaaaagaaaaccgatccaaagattcttcacct 94  Q
    ||||||||||||||||||| |||| ||||||||||||||| |||||||||  ||| | |||||||||    
T  1885 aacttcaaaatgaaaagggtgatgtggtaacttaagaaaataaaaccgattgaaatactcttcacct 1819  T

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