View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18678_low_1 (Length: 727)
Name: NF18678_low_1
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 637; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 27 - 716
Target Start/End: Complemental strand, 33081122 - 33080432
Alignment:
| Q |
27 |
gttaatgatcatgttggttagaaaccttaagttaaatgagatgataaattcaaacctgataagacaccttggacagaatcaagtagtatggaaatagcaa |
126 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33081122 |
gttaatgatcatgttggtgagaaaccttaagttaaatgagatgataaattcaaacctgataagacaccttggacagaatcaagtagtatggaaatagcaa |
33081023 |
T |
|
| Q |
127 |
ggaagggtgctattgaagcaaactcatgtttgatcgtaggactactgctaaacagccgaatccatatatcatgaccaaatacaatcatcaaagcaaaaca |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
33081022 |
ggaagggtgctattgaagcaaactcatgtttgatcgtaggactactgctaaacagccgaatccatataccatgaccaaatacaatcatcaacgcaaaaca |
33080923 |
T |
|
| Q |
227 |
gaaaccaaggaggatagagagctttagactgactctcattgcatgtttggctctttctggttggcctgccccaagttcattggaaacccttgtgctataa |
326 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33080922 |
gaatccaaggaggatagagagctttagactgactctcattgcatgtttggctctttctggttggcctgccccaagttcattggaaacccttgtgctataa |
33080823 |
T |
|
| Q |
327 |
aagttcaagtttcaataaaatgcctctatgaaggaaatttgattgcttgcagtcacacaataacgttgtcagggatctcgatcgttgaatgaaaagtgga |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33080822 |
aagttcaagtttcaataaaatgcctctatgaaggaaatttgattgcttgcagtcacacaataacgttgtcagggatctcgatcgttggatgaaaagtgga |
33080723 |
T |
|
| Q |
427 |
tgtctcatattttaaagttgatttggtaaagtta--atatgagtcaccgatcttcatttaacgatcaagatctcctgactatgtgctttcctagactata |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33080722 |
tgtctcatattttaaagttgatttggtaaagttaatatatgagtcatcgatcttc-tttaacgatcaagatctcctgactgtgtgctttcctagactata |
33080624 |
T |
|
| Q |
525 |
ggaaatttaggtctagaagggaatatgcaaaaatgccggtaaaggagagtatgttaacatagactaactaaccttgcggctgcactaagaccgtaagtga |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33080623 |
ggaaatttaggtctagaagggaatatgcaaaaatgctggtaaaggagagtatgttaacatagactaactaaccttgcggctgcactaagaccataagtga |
33080524 |
T |
|
| Q |
625 |
tcaggcaagcgatgaattctgtgtttgcactgcataatttttagttttgaagaattacaatagtggatcatgtgaatatttattctcttcat |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33080523 |
tcaggcaagcgatgaattctgtgtttgcactgcataatttttagttttgaagaattacaatagtggatcatgtgaatatttattctcttcat |
33080432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 27 - 708
Target Start/End: Complemental strand, 33071432 - 33070748
Alignment:
| Q |
27 |
gttaatgatcatgttggttagaaaccttaagttaaatgagatgataaattcaaacctgataagacaccttggacagaatcaagtagtatggaaatagcaa |
126 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33071432 |
gttaatgatcatgttggtgagaaaccttaagttaaatgagatgataaattcaaacctgataagacaccttggacagaatcaagtagtatggaaatagcaa |
33071333 |
T |
|
| Q |
127 |
ggaagggtgctattgaagcaaactcatgtttgatcgtaggactactgctaaacagccgaatccatatatcatgaccaaatacaatcatcaaagcaaaaca |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
33071332 |
ggaagggtgctattgaagcaaactcatgtttgattgtaggactactgctaaacagccgaatccatataccatgaccaaatacaatcatcaacgcaaaaca |
33071233 |
T |
|
| Q |
227 |
gaaaccaaggaggatagagagctttagactgactctcattgcatgtttggctctttctggttggcctgccccaagttcattggaaacccttgtgctataa |
326 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33071232 |
gaatccaaggaggatagagagctttagactgactctcattgcatgtttggctctttctggttggcctgccccaagttcattggaaacccttgtgctataa |
33071133 |
T |
|
| Q |
327 |
aagttcaagtttcaataaaatgcctctatgaaggaaatttgattgcttgcagtcacacaataacgttgtcagggatctcgatcgttgaatgaaaagtgga |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
33071132 |
aagttcaagtttcaataaaatgcctctatgaaggaaatttgattgcttgcagtcacacaataacgttgtcagggatctcgatcgttggatgagaagtgga |
33071033 |
T |
|
| Q |
427 |
tgtctcatattttaaagttgatttggtaaagtta--atatgagtcaccgatcttcatttaacgatcaagatctcctgactatgtgctttcctagactata |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33071032 |
tgtctcatattttaaagttgatttggtaaagttaatatatgagtcatcgatcttcatttaacgatcaagatctcttgactatgtgctttcctagactata |
33070933 |
T |
|
| Q |
525 |
ggaaatttaggtctagaagggaatatgcaaaaatgccggtaaaggagagtatgttaacatagactaactaaccttgcggctgcactaagaccgtaagtga |
624 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||| ||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
33070932 |
ggaaatttaggtctagaagggaatatacaaaaatgtcggcaaaagagagtatgttaacgtagaccaactaaccttgcggctgcactaagaccataaatga |
33070833 |
T |
|
| Q |
625 |
tcaggcaagcgatgaattctgtgtttgcactgcataatttttag-ttttgaagaattacaatagtggatcatgtgaatatttatt |
708 |
Q |
| |
|
||||| ||||| ||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
33070832 |
tcaggtaagcggtgagttctgtgtttgcactgcacaatttttagtttttgaagaattacaatagtgaatcatatgaatatttatt |
33070748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 46 - 342
Target Start/End: Complemental strand, 33089744 - 33089448
Alignment:
| Q |
46 |
agaaaccttaagttaaatgagatgataaattcaaacctgataagacaccttggacagaatcaagtagtatggaaatagcaaggaagggtgctattgaagc |
145 |
Q |
| |
|
||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
33089744 |
agaaagcttaatttaaaatatatgataaattcaaacctgataagacaccttggacagaatctagtagtatggaagtagcaaggaagggtgatattgaagc |
33089645 |
T |
|
| Q |
146 |
aaactcatgtttgatcgtaggactactgctaaacagccgaatccatatatcatgaccaaatacaatcatcaaagcaaaacagaaaccaaggaggatagag |
245 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
33089644 |
aaacttatgtttgatcgtaggactactgctaaacatccgaatccatatatcatgaccaaatacaatcatcaaagcaaaacagaaaccaaggacgacagag |
33089545 |
T |
|
| Q |
246 |
agctttagactgactctcattgcatgtttggctctttctggttggcctgccccaagttcattggaaacccttgtgctataaaagttcaagtttcaat |
342 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||| || |||||||| || | ||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
33089544 |
agctttaatgtgactctcattgcatgttttgctctttcggggtggcctgctcccaattcattggaaattcttgtgctataaaagttcaaatttcaat |
33089448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 46 - 342
Target Start/End: Complemental strand, 33097240 - 33096944
Alignment:
| Q |
46 |
agaaaccttaagttaaatgagatgataaattcaaacctgataagacaccttggacagaatcaagtagtatggaaatagcaaggaagggtgctattgaagc |
145 |
Q |
| |
|
||||| ||||| ||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
33097240 |
agaaagcttaatttaaaatatatgataaattcaaacctgataagacaccttggacagaatctagtagtatggaagtagcaaggaagggtgatattgaagc |
33097141 |
T |
|
| Q |
146 |
aaactcatgtttgatcgtaggactactgctaaacagccgaatccatatatcatgaccaaatacaatcatcaaagcaaaacagaaaccaaggaggatagag |
245 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
33097140 |
aaacttatgtttgatcgtaggactactgctaaacatccgaatccatatatcatgaccaaatacaatcatcaaagcaaaacagaaaccaaggacgacagag |
33097041 |
T |
|
| Q |
246 |
agctttagactgactctcattgcatgtttggctctttctggttggcctgccccaagttcattggaaacccttgtgctataaaagttcaagtttcaat |
342 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||| || |||||||| || | ||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
33097040 |
agctttaatgtgactctcattgcatgttttgctctttcggggtggcctgctcccaattcattggaaattcttgtgctataaaagttcaaatttcaat |
33096944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 46 - 342
Target Start/End: Complemental strand, 33063660 - 33063364
Alignment:
| Q |
46 |
agaaaccttaagttaaatgagatgataaattcaaacctgataagacaccttggacagaatcaagtagtatggaaatagcaaggaagggtgctattgaagc |
145 |
Q |
| |
|
||||| ||||| |||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||| |
|
|
| T |
33063660 |
agaaagcttaacctaaaagagatgaggaatttaaacctgataagacaccttggacagaatcaagtagtatggaaatagcaagcaagggtgtcactgaagc |
33063561 |
T |
|
| Q |
146 |
aaactcatgtttgatcgtaggactactgctaaacagccgaatccatatatcatgaccaaatacaatcatcaaagcaaaacagaaaccaaggaggatagag |
245 |
Q |
| |
|
|||||| | |||||| | |||||| ||||| ||| ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||| |||| |
|
|
| T |
33063560 |
aaactcctttttgataatgggactatcactaaaaagctgaatccatatatcatgaccaaatacaagcatcaaaacaaaacataaaccaaggaggagagag |
33063461 |
T |
|
| Q |
246 |
agctttagactgactctcattgcatgtttggctctttctggttggcctgccccaagttcattggaaacccttgtgctataaaagttcaagtttcaat |
342 |
Q |
| |
|
||||||| | |||||| |||||||||||| ||||||||| |||||||||| || | |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33063460 |
agctttaaagtgactcccattgcatgttttgctctttcttgttggcctgctcccaattcattggaaactcttgtgctataaaagttcaagtttcaat |
33063364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 52 - 341
Target Start/End: Complemental strand, 33049684 - 33049392
Alignment:
| Q |
52 |
cttaagttaaat-gagatgataaattcaaacctgataagacaccttggacagaatcaagtagtatggaaatagcaaggaagggtgctattgaagcaaact |
150 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
33049684 |
cttaagttaaaaagagatgaggaattcaaacctgataagacaccttggacagaatctagtagtatggaaatagcaagcaaaggtgttattgaagcaaact |
33049585 |
T |
|
| Q |
151 |
catgtttgatcgtaggactactgctaaacagccgaatccatatatcatgaccaaatacaatcatcaaagcaaaacagaaaccaaggaggatagagagctt |
250 |
Q |
| |
|
| | |||||| |||||||| ||||||| |||||||||||||||||||||| | || ||||||| ||||||| || |||||||||| ||| ||||| |
|
|
| T |
33049584 |
cctctttgataataggactatcactaaacatttgaatccatatatcatgaccaaacaaaagcatcaaaacaaaacaaaatccaaggaggacagatagctt |
33049485 |
T |
|
| Q |
251 |
tagactgactctcattgcatgtttggctctttctggttggcctgccccaagttcattggaaacccttgtgctat--aaaagttcaagtttcaa |
341 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||| || ||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
33049484 |
tagagtgactctcattgcatgtttagctttttcaggatggcctgcccccaattcattggaaatccttgtgctataaaaaagttcaagtttcaa |
33049392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 569 - 659
Target Start/End: Complemental strand, 33089038 - 33088948
Alignment:
| Q |
569 |
gagagtatgttaacatagactaactaaccttgcggctgcactaagaccgtaagtgatcaggcaagcgatgaattctgtgtttgcactgcat |
659 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| | |||| |||||||||||||| ||||||||| |
|
|
| T |
33089038 |
gagagtatgttaacttagactaactaaccttgcagctgcactaagaccataagtgatcatgtaagcaatgaattctgtgttcgcactgcat |
33088948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 569 - 659
Target Start/End: Complemental strand, 33096534 - 33096444
Alignment:
| Q |
569 |
gagagtatgttaacatagactaactaaccttgcggctgcactaagaccgtaagtgatcaggcaagcgatgaattctgtgtttgcactgcat |
659 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| | |||| |||||||||||||| ||||||||| |
|
|
| T |
33096534 |
gagagtatgttaacttagactaactaaccttgcagctgcactaagaccataagtgatcatgtaagcaatgaattctgtgttcgcactgcat |
33096444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 574 - 658
Target Start/End: Complemental strand, 33049325 - 33049241
Alignment:
| Q |
574 |
tatgttaacatagactaactaaccttgcggctgcactaagaccgtaagtgatcaggcaagcgatgaattctgtgtttgcactgca |
658 |
Q |
| |
|
||||||||| ||||| |||||||||||| |||||||||||||| |||||||||| | |||| ||||||||||||||| ||||||| |
|
|
| T |
33049325 |
tatgttaacttagaccaactaaccttgcagctgcactaagaccataagtgatcatgtaagcaatgaattctgtgttttcactgca |
33049241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 461 - 659
Target Start/End: Complemental strand, 33063212 - 33063017
Alignment:
| Q |
461 |
atatgagtcaccgatcttcatttaacgatcaagatctcctgactatgtgctttcctagactataggaaatttaggtctagaagggaatatgcaaaaatgc |
560 |
Q |
| |
|
|||||||||| ||||||| || ||||||| |||| || |||| | | |||| ||||||||||||||| ||||| | |||| ||||||| ||||| |
|
|
| T |
33063212 |
atatgagtcatcgatctttatctaacgattgagatatcttgacagcgcgatttcttagactataggaaatccaggtcgaaaaggatttatgcaacaatgc |
33063113 |
T |
|
| Q |
561 |
cggtaaaggagagtatgttaacatagactaactaaccttgcggctgcactaagaccgtaagtgatcaggcaagcgatgaattctgtgtttgcactgcat |
659 |
Q |
| |
|
|| |||| ||| |||||| ||||| ||||||||||| |||||||||||||| |||||||||| | |||| |||||||||||||| ||||||||| |
|
|
| T |
33063112 |
cgcgaaag---agtgtgttaaagtagaccgactaaccttgcagctgcactaagaccataagtgatcatgtaagcaatgaattctgtgttcgcactgcat |
33063017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 339 - 442
Target Start/End: Complemental strand, 33089393 - 33089289
Alignment:
| Q |
339 |
caataaaatg-cctctatgaaggaaatttgattgcttgcagtcacacaataacgttgtcagggatctcgatcgttgaatgaaaagtggatgtctcatatt |
437 |
Q |
| |
|
|||||||||| ||| ||||||||| ||| |||| |||||||| ||||| |||||||| ||||||| |||||| ||||||| ||||||| ||||||| |
|
|
| T |
33089393 |
caataaaatgtcctttatgaaggacattggattttctgcagtcatacaatcacgttgtcgcagatctcggtcgttggatgaaaattggatgtatcatatt |
33089294 |
T |
|
| Q |
438 |
ttaaa |
442 |
Q |
| |
|
||||| |
|
|
| T |
33089293 |
ttaaa |
33089289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 339 - 442
Target Start/End: Complemental strand, 33096889 - 33096785
Alignment:
| Q |
339 |
caataaaatg-cctctatgaaggaaatttgattgcttgcagtcacacaataacgttgtcagggatctcgatcgttgaatgaaaagtggatgtctcatatt |
437 |
Q |
| |
|
|||||||||| ||| ||||||||| ||| |||| |||||||| ||||| |||||||| ||||||| |||||| ||||||| ||||||| ||||||| |
|
|
| T |
33096889 |
caataaaatgtcctttatgaaggacattggattttctgcagtcatacaatcacgttgtcgcagatctcggtcgttggatgaaaattggatgtatcatatt |
33096790 |
T |
|
| Q |
438 |
ttaaa |
442 |
Q |
| |
|
||||| |
|
|
| T |
33096789 |
ttaaa |
33096785 |
T |
|
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