View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_10 (Length: 597)
Name: NF18678_low_10
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 140 - 580
Target Start/End: Complemental strand, 47859956 - 47859518
Alignment:
| Q |
140 |
catgctcctcccgtttatgaagaatattacaacagtggcctcctcaatcttattagtataaaatgggtaattgtatacgtgccttgcatatgtaagtgtt |
239 |
Q |
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| T |
47859956 |
catgctcctcccgtttatgaagaatattacaacagtggcctcctcaatcttattagtataaaatgggtacttgtatacgtgccttgcatatgtaagtgtt |
47859857 |
T |
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| Q |
240 |
ccaagtgttgtatataaaattgctacgtagcaaccaaaataactatatatatatgcagattgcatatatagctggagttgtctaatcttatcttgttgat |
339 |
Q |
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| T |
47859856 |
ccaagtgttgtataaaaaattgctacgtagcaaccaaaataactatatatat--gcagattgcatatatagctggagttgtctaatcttatcttgttgat |
47859759 |
T |
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| Q |
340 |
tcctttctctattttcattgttttgtgcgtgtcctcttttccataagattttcaaagaacacaacataatcaccaccatttacattatagtaacaaccta |
439 |
Q |
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| T |
47859758 |
tcctttctctattttcattgttttgtgcgtgtcctcttttccataagattttcaaagaacacaacataatcaccaccatttacattatagtaacaaccta |
47859659 |
T |
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| Q |
440 |
cagaagaaggatcgaccaaaatgattcgaagaacagtgaactttccgagtttaaggaaattgcttcttcgtcctagttatctgtcttcgtccaaggtgat |
539 |
Q |
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| T |
47859658 |
cagaagaaggatcgaccaaaatgattcgaagaacagtgaactttccgagtttaaggaaattgcttcttcgtcctagttatctgtcttcgtccaaggtgat |
47859559 |
T |
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| Q |
540 |
caacgttttactttctcattctttgttagtttaattttctc |
580 |
Q |
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| T |
47859558 |
caacgttttactttctcattctttgttagtttaattttctc |
47859518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 47860062 - 47860012
Alignment:
| Q |
33 |
aaacacgttttcaacaaatttgaagttatctattgtcaattgtgtttatca |
83 |
Q |
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| T |
47860062 |
aaacacgttttcaacaaatttgaagttatctattgtcaattgtgtttatca |
47860012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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