View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18678_low_14 (Length: 540)
Name: NF18678_low_14
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_14 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 18 - 533
Target Start/End: Complemental strand, 2749446 - 2748931
Alignment:
| Q |
18 |
acatacatcattctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacatcat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2749446 |
acatacatcattctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacgtcat |
2749347 |
T |
|
| Q |
118 |
caaagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtcttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2749346 |
caaagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtcttt |
2749247 |
T |
|
| Q |
218 |
agtactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2749246 |
agtactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgat |
2749147 |
T |
|
| Q |
318 |
acctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaata |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2749146 |
acctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaata |
2749047 |
T |
|
| Q |
418 |
accaaccagacagttcttcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttc |
517 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2749046 |
accaaccagacagttcttcttttgggacttcaataccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcatgccattttccattttc |
2748947 |
T |
|
| Q |
518 |
tctctctcctatgcta |
533 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2748946 |
tctctctcctatgcta |
2748931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 23 - 525
Target Start/End: Complemental strand, 5413332 - 5412830
Alignment:
| Q |
23 |
catcattctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacatcatcaaag |
122 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||| || ||||| ||||||| ||||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
5413332 |
catcattctagtggtgattatgatcctactacctttattgtttttaggcatcgcaaattcaacctggtcagagaaatcttgttgccatacatcatcaaag |
5413233 |
T |
|
| Q |
123 |
aatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtac |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| ||| | |
|
|
| T |
5413232 |
aatatcaaatacctcttatgttgcaggtattgcctcacttctataatcagtgaccggtcatccattttgtgtaacatctgcggaagagagtcttcagttc |
5413133 |
T |
|
| Q |
223 |
tccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctt |
322 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
5413132 |
cccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgttacgcaagcacaacaatcaaagtgtgctgatacctt |
5413033 |
T |
|
| Q |
323 |
tttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaa |
422 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || || || || ||| ||||||||||||||||| |
|
|
| T |
5413032 |
ttggctttcaaaaactagcttggcaagagtggtttttcctaggccccccattcctaccactgatatgactgtacgttccgctgcaccatccaataaccaa |
5412933 |
T |
|
| Q |
423 |
ccagacagttcttcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctct |
522 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||| ||| || || ||||||||||||||||| |||||| ||||||||||| ||| |
|
|
| T |
5412932 |
ccagacaattcttcttttggaccttcaattcctacaacttctgtttctgtaatgaatagggaagacagtcgaggatctcgccatcttccattttctgtct |
5412833 |
T |
|
| Q |
523 |
ctc |
525 |
Q |
| |
|
||| |
|
|
| T |
5412832 |
ctc |
5412830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 526
Target Start/End: Original strand, 2855497 - 2856005
Alignment:
| Q |
18 |
acatacatcattctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacatcat |
117 |
Q |
| |
|
|||| |||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||| ||||||||| | ||||||||||||||| ||||||| |
|
|
| T |
2855497 |
acatgcatcattctagtagtgattatgatcctactacctttattgttattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcat |
2855596 |
T |
|
| Q |
118 |
caaagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtcttt |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| |||||| | |||||| ||||| |
|
|
| T |
2855597 |
caaagaataccaaatacctcttatgttgcaggtattgccttacttgtataatcagtgactggtcatccattttgtgcaacatcagtggaagagggtcttc |
2855696 |
T |
|
| Q |
218 |
agtactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgat |
317 |
Q |
| |
|
||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || || | |
|
|
| T |
2855697 |
agttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgttgtt |
2855796 |
T |
|
| Q |
318 |
acctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaata |
417 |
Q |
| |
|
||||||| ||| ||||||| ||||||||||||||| |||||||||| || |||||||| ||||| || ||||| ||||||||| | ||| ||||||| |
|
|
| T |
2855797 |
accttttggctgtcaaaaattagcttggcaagagtagtttttcctataccccccattcccaccactgaaatcactttgcgctcagatataccttccaata |
2855896 |
T |
|
| Q |
418 |
accaaccagacagttcttcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttc |
517 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
2855897 |
accaaccagacaattcttcttttgggccttcaatgcctacaacttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttc |
2855996 |
T |
|
| Q |
518 |
tctctctcc |
526 |
Q |
| |
|
| ||||||| |
|
|
| T |
2855997 |
tgtctctcc |
2856005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 518
Target Start/End: Original strand, 2838287 - 2838787
Alignment:
| Q |
18 |
acatacatcattctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacatcat |
117 |
Q |
| |
|
|||| |||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||| || |||||| | ||||||||||||||| ||||||| |
|
|
| T |
2838287 |
acatgcatcattctagtagtgattatgatcctactacctttattgttattaggcatggcaaattcaatctggtcggaaaaatcttcttgccaaacatcat |
2838386 |
T |
|
| Q |
118 |
caaagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtcttt |
217 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||| |||||| ||||| |
|
|
| T |
2838387 |
caaagaatatcaagtacctcttatgttggaggtattgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttc |
2838486 |
T |
|
| Q |
218 |
agtactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgat |
317 |
Q |
| |
|
||| | |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||| | |
|
|
| T |
2838487 |
agttccccgacaaaattgctccatcatgtttatcaacaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgtt |
2838586 |
T |
|
| Q |
318 |
acctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaata |
417 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| || |||||||||||| |||| ||||||| |
|
|
| T |
2838587 |
accttttggctttcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatgactgtgcgctcagctgcaccctccaata |
2838686 |
T |
|
| Q |
418 |
accaaccagacagttcttcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttc |
517 |
Q |
| |
|
|||||||| | | ||||||| |||| ||||||| ||| |||| ||||||||||||||| ||||| |||||||||||||| || ||||| |||||||||| |
|
|
| T |
2838687 |
accaaccatatatttcttctcttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttc |
2838786 |
T |
|
| Q |
518 |
t |
518 |
Q |
| |
|
| |
|
|
| T |
2838787 |
t |
2838787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 23 - 525
Target Start/End: Complemental strand, 2807713 - 2807211
Alignment:
| Q |
23 |
catcattctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacatcatcaaag |
122 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||||||||||| || ||||| ||||||| ||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
2807713 |
catcattctagttgtgattatgatcctactacctttattgttgttaggcatagcaaattcaacctggtcagaaaaatcttcttgccatacatcatcaaag |
2807614 |
T |
|
| Q |
123 |
aatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtac |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| | |||||||| |||| ||||| | | |||||| ||||| ||| |
|
|
| T |
2807613 |
aatatcaaatacctcttatgttgcaggtattgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagttt |
2807514 |
T |
|
| Q |
223 |
tccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctt |
322 |
Q |
| |
|
| |||| |||||||||||||||||||||| ||| |||||||||||||| ||||||||||||| || ||||||||||||||||||||||| || |||| | |
|
|
| T |
2807513 |
cctgacaaaattgctccatcatgtttatcatcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacgacaatcaaagtgtgttgttaccgt |
2807414 |
T |
|
| Q |
323 |
tttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaa |
422 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
2807413 |
ttggctatcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaa |
2807314 |
T |
|
| Q |
423 |
ccagacagttcttcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctct |
522 |
Q |
| |
|
|||||| ||||||| |||| ||||| ||| |||| |||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
2807313 |
acagacatttcttctcttgggaattcaaatcctacaatttctctttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtct |
2807214 |
T |
|
| Q |
523 |
ctc |
525 |
Q |
| |
|
||| |
|
|
| T |
2807213 |
ctc |
2807211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 27 - 524
Target Start/End: Complemental strand, 2759656 - 2759159
Alignment:
| Q |
27 |
attctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacatcatcaaagaata |
126 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
2759656 |
attctagtggtgattatgatcctactacctttgttgttattaggcatggcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaata |
2759557 |
T |
|
| Q |
127 |
tcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccg |
226 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| || ||| |||| |||||| ||||||||||||||||||| ||| |||||| ||||| ||| | | |
|
|
| T |
2759556 |
tcaaatacctcttatgttctaggtatttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcagtttcctg |
2759457 |
T |
|
| Q |
227 |
acagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttg |
326 |
Q |
| |
|
||| |||||| ||||||| ||||||| || |||||||||||||| |||||||||||| || |||||| |||||||||| |||| || |||||||| | |
|
|
| T |
2759456 |
acaaaattgcgccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagcttgacaatcaaactgtgttgttaccttttgg |
2759357 |
T |
|
| Q |
327 |
ctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccag |
426 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| || || || |||||||||||||| || ||||| ||||| |||||| ||| ||||||||||||||| |
|
|
| T |
2759356 |
ctgtcaaaaactagcttggcaagagtggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgaaccctccaataaccaaccat |
2759257 |
T |
|
| Q |
427 |
acagttcttcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctctct |
524 |
Q |
| |
|
| |||||||||||||| ||||||| ||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
2759256 |
atagttcttcttttgggccttcaaatcctacaatttctgtttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctct |
2759159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 2769520 - 2769020
Alignment:
| Q |
18 |
acatacatcattctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacatcat |
117 |
Q |
| |
|
|||| ||||||||| ||||| || || |||||||||| |||||||||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||| |
|
|
| T |
2769520 |
acatgcatcattcttgtggttattatgatcctactacgtttattgttatttggcatggaaaattcaacctggtcggaaaaatcttcttgccatacatcat |
2769421 |
T |
|
| Q |
118 |
caaagaatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtcttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||| || ||||| | |||||| ||||||||||||||||||||||| || |||| |||| |
|
|
| T |
2769420 |
caaagaatatcaaatacctcttatgttgtaggtatttccttacctctattaccagtgacatgtcatccattttgtgtaacatctttagcagaggttcttc |
2769321 |
T |
|
| Q |
218 |
agtactccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgat |
317 |
Q |
| |
|
||| | |||| |||||||||||||| ||||||| || |||||||||||||| |||||||||||||||| |||||||||||||||||||| ||| | | |
|
|
| T |
2769320 |
agtttcctgacaaaattgctccatcatttttatcagtaaccctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgcagtt |
2769221 |
T |
|
| Q |
318 |
acctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaata |
417 |
Q |
| |
|
||||||| ||| ||| ||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||| |||| |||| ||||||| |
|
|
| T |
2769220 |
accttttggctgtcataaactagtttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaata |
2769121 |
T |
|
| Q |
418 |
accaaccagacagttcttcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttc |
517 |
Q |
| |
|
|||||||| | | ||||||| |||| ||||| | ||| |||| |||||||||||||||||| || ||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
2769120 |
accaaccaaataattcttctcttgggccttccaatcctacaatttctgtttcttcaataaagagggaagacatccgaggatcacgccatcttccactttc |
2769021 |
T |
|
| Q |
518 |
t |
518 |
Q |
| |
|
| |
|
|
| T |
2769020 |
t |
2769020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 23 - 506
Target Start/End: Complemental strand, 2819003 - 2818520
Alignment:
| Q |
23 |
catcattctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacatcatcaaag |
122 |
Q |
| |
|
||||||||| |||||||| || |||||||||||||| |||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
2819003 |
catcattcttgtggtgattatgatcctactacctttgttgttattgggcatggcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaag |
2818904 |
T |
|
| Q |
123 |
aatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtac |
222 |
Q |
| |
|
||||| |||||||||||||||| ||||||| ||| || |||||||| ||| || ||||||||||||| |||| |||| ||| || ||||| || |
|
|
| T |
2818903 |
aatattaaatacctcttatgttctaggtatttccttacctctataatcagtaacctgtcatccattttgcgtaaaatctctagatcagggtcttcagctt |
2818804 |
T |
|
| Q |
223 |
tccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctt |
322 |
Q |
| |
|
| || | |||||||||||||| ||||||| || |||||||||||||| |||||||||||| || |||||| ||||||||||| |||| || |||||| |
|
|
| T |
2818803 |
cctgataaaattgctccatcatttttatcagtaatcctctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaactgtgttgttacctt |
2818704 |
T |
|
| Q |
323 |
tttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaa |
422 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| ||| |||| |||||||||||| |
|
|
| T |
2818703 |
ttggctgtcaaaaactagcttggcaagagtggtttttcctagaccccccattcctaccactgatatcactgtgcgctcggctgcaccctccaataaccaa |
2818604 |
T |
|
| Q |
423 |
ccagacagttcttcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccat |
506 |
Q |
| |
|
||| | ||||||||| | || ||||||| ||| || | ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2818603 |
ccatatagttcttctctcgggccttcaaatcctacgatttctgtttcttcaatgaaaagagaagacagtcgaggatcacgccat |
2818520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 23 - 506
Target Start/End: Complemental strand, 2797807 - 2797324
Alignment:
| Q |
23 |
catcattctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacatcatcaaag |
122 |
Q |
| |
|
||||||||| ||||||||||| |||||| | |||| |||||||| ||||||||||||| ||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
2797807 |
catcattctcgtggtgatgatgatcctatttgctttgttgttattaggcatggcaaattcaacctggtcagaaaagtcttcttgccatacatcatcaaag |
2797708 |
T |
|
| Q |
123 |
aatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtac |
222 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||||||||||| ||||| | || ||| |
|
|
| T |
2797707 |
aatatcaaatactttttatgttgcaggtattgcctcacttgtataatcaatgacttgtcatccattttgtgtaacatctgcaaaagagggctttcagttt |
2797608 |
T |
|
| Q |
223 |
tccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctt |
322 |
Q |
| |
|
| ||| |||| |||||||||||| ||||| | || ||||| ||||| |||||||||||||||| |||||||||||||||||| | || || |||||| |
|
|
| T |
2797607 |
cgctacaaaattcctccatcatgttgatcaatatccccctcacggtgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgttacctt |
2797508 |
T |
|
| Q |
323 |
tttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaa |
422 |
Q |
| |
|
|| || || |||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| |||||||||||| || || | ||||||| |
|
|
| T |
2797507 |
ttgactgtcgaaaactagcttggcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaaccaa |
2797408 |
T |
|
| Q |
423 |
ccagacagttcttcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccat |
506 |
Q |
| |
|
||||||| |||||| | || ||||||| ||| |||| | | ||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
2797407 |
ccagacaattcttccctcgggccttcaaatccgacaattgcagtttcttcaataaaaagggaagacagtcgaggatcacaccat |
2797324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 23 - 298
Target Start/End: Complemental strand, 2790766 - 2790491
Alignment:
| Q |
23 |
catcattctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacatcatcaaag |
122 |
Q |
| |
|
|||||||||||||||||| || ||||||| |||||||||||||||||| |||||||||| || |||||| | |||||||||||||||||||||||| ||| |
|
|
| T |
2790766 |
catcattctagtggtgattatgatcctacaacctttattgttatttggaatggcaaattcaatctggtcggaaaaatcttcttgccatacatcatcgaag |
2790667 |
T |
|
| Q |
123 |
aatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtac |
222 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||||||||| || ||| ||||||| |||||||||||||||||||||||||| ||||| | ||| ||| |
|
|
| T |
2790666 |
aatatcaaatactttttatgtttcaggtattgcctcacttgtagaatgagtgacttgtcatccattttgtgtaacatctgcaaaagagggccttcagttt |
2790567 |
T |
|
| Q |
223 |
tccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacg |
298 |
Q |
| |
|
| ||| |||| |||||||||||| ||||| | || ||||| ||| | ||||||||||| |||| ||||||||| |
|
|
| T |
2790566 |
cgctacaaaattcctccatcatgttgatcaatatccccctcacggtgaatgattgagaaacggtgatgcaagcacg |
2790491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 345 - 506
Target Start/End: Complemental strand, 2790491 - 2790330
Alignment:
| Q |
345 |
gcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttcttttggac |
444 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| || ||||| |||||||||||| || ||||||||||||||||||| |||||| | || | |
|
|
| T |
2790491 |
gcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaaccagacaattcttccctcgggc |
2790392 |
T |
|
| Q |
445 |
cttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccat |
506 |
Q |
| |
|
|||||| ||| |||| | | ||||||||||| ||||| ||||||| ||||||||| ||||| |
|
|
| T |
2790391 |
cttcaaatccgacaattgcagtttcttcaatgaaaagggaagacaaccgaggatcatgccat |
2790330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 21945734 - 21945673
Alignment:
| Q |
324 |
ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacgga |
385 |
Q |
| |
|
||||| ||||||||| |||||| ||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
21945734 |
ttgctgtcaaaaactttcttggctagagtggtttttccttgccctcccattcctaccacgga |
21945673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 400
Target Start/End: Original strand, 22648533 - 22648590
Alignment:
| Q |
343 |
tggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||| || || || |||||||| |
|
|
| T |
22648533 |
tggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctc |
22648590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 400
Target Start/End: Complemental strand, 21930531 - 21930455
Alignment:
| Q |
324 |
ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc |
400 |
Q |
| |
|
||||| ||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| |||||||| |
|
|
| T |
21930531 |
ttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc |
21930455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 400
Target Start/End: Complemental strand, 22028110 - 22028034
Alignment:
| Q |
324 |
ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc |
400 |
Q |
| |
|
||||| ||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| |||||||| |
|
|
| T |
22028110 |
ttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc |
22028034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 400
Target Start/End: Complemental strand, 22034627 - 22034551
Alignment:
| Q |
324 |
ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc |
400 |
Q |
| |
|
||||| ||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| |||||||| |
|
|
| T |
22034627 |
ttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc |
22034551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 400
Target Start/End: Complemental strand, 22179527 - 22179451
Alignment:
| Q |
324 |
ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctc |
400 |
Q |
| |
|
||||| ||||||||| |||||| ||||| ||||||||| | ||||||||||| |||||| ||| ||| |||||||| |
|
|
| T |
22179527 |
ttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcccaccacgaataccacagtgcgctc |
22179451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 400
Target Start/End: Original strand, 22657366 - 22657498
Alignment:
| Q |
268 |
tgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcc |
367 |
Q |
| |
|
|||||||||| || ||||||| ||| ||||||| ||||||||| | |||| |||||| ||||||||| || |||||||| ||||||||| | || |
|
|
| T |
22657366 |
tgtaagattgtgacactgtgatccaaacacgacattcaaagtgtccaacaacctctttgctgtcaaaaacttttttagcaagagtagtttttccttgccc |
22657465 |
T |
|
| Q |
368 |
tcccattcctaccacggatatcaccgtgcgctc |
400 |
Q |
| |
|
||||||||| || || ||||| || |||||||| |
|
|
| T |
22657466 |
tcccattcccacgacagatatgacagtgcgctc |
22657498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 22104833 - 22104775
Alignment:
| Q |
324 |
ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccac |
382 |
Q |
| |
|
||||| ||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
22104833 |
ttgctgtcaaaaactctcttggctagagttgtttttccttgccctcccattcctaccac |
22104775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 22187098 - 22187040
Alignment:
| Q |
324 |
ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccac |
382 |
Q |
| |
|
||||| ||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
22187098 |
ttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccac |
22187040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 382
Target Start/End: Original strand, 22615559 - 22615673
Alignment:
| Q |
268 |
tgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcc |
367 |
Q |
| |
|
|||| |||||||| ||||||| || ||||||||||||||||| | | |||| ||||| |||||||| |||||||||||||||||| || | || |
|
|
| T |
22615559 |
tgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccc |
22615658 |
T |
|
| Q |
368 |
tcccattcctaccac |
382 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
22615659 |
tcccattcccaccac |
22615673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 22052843 - 22052786
Alignment:
| Q |
324 |
ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctacca |
381 |
Q |
| |
|
||||| ||||||||| |||||| ||||| ||||||||| | |||||||||||||||| |
|
|
| T |
22052843 |
ttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctacca |
22052786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 382
Target Start/End: Complemental strand, 22208136 - 22208072
Alignment:
| Q |
318 |
acctttttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccac |
382 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||||||| ||||| ||| | |||||||| || ||||| |
|
|
| T |
22208136 |
acctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaaccac |
22208072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 22621288 - 22621328
Alignment:
| Q |
342 |
ttggcaagagtggtttttcctaggcctcccattcctaccac |
382 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
22621288 |
ttggcaagagtggattttccttgtcctcccattcctaccac |
22621328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 23 - 532
Target Start/End: Original strand, 5844 - 6353
Alignment:
| Q |
23 |
catcattctagtggtgatgataatcctactacctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacatcatcaaag |
122 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
5844 |
catcattcttgtggtgattataatcctactacctttattgttattaggcatggcaaattcaacctggtcagaaaaatcttcttgccatacatcatcaaag |
5943 |
T |
|
| Q |
123 |
aatatcaaatacctcttatgttgcaggtattgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtac |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||| |||||| ||||| ||| |
|
|
| T |
5944 |
aatatcaaatacctcttatgttgcaggtattgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagttt |
6043 |
T |
|
| Q |
223 |
tccgacagaattgctccatcatgtttatcaacaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctt |
322 |
Q |
| |
|
|||||| |||||||||||||||||||| | || |||||||| ||||| | ||||||||||| || |||||||||||||||||| |||| || |||||| |
|
|
| T |
6044 |
cccgacaaaattgctccatcatgtttatgagtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttacctt |
6143 |
T |
|
| Q |
323 |
tttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaa |
422 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| || || || |||||||||||| || |||||||||||| |
|
|
| T |
6144 |
ttggctgtcaaaaactagcttggcaagagtggttttccctatacctcccattcctaccactgaaattacggtgcgctcagctggactctccaataaccaa |
6243 |
T |
|
| Q |
423 |
ccagacagttcttcttttggaccttcaattccaacaacttctgtttcttcaataaaaagagaagacagtcgaggatcacgccattttccattttctctct |
522 |
Q |
| |
|
||| | | ||| ||| |||| ||||| | ||| |||||||| ||||||||||||||||| | ||| | |||||||||||||||| ||||||||||| || |
|
|
| T |
6244 |
ccatataattcctctcttgggccttcgaatcctacaacttcagtttcttcaataaaaagggcagataatcgaggatcacgccatcttccattttctgcct |
6343 |
T |
|
| Q |
523 |
ctcctatgct |
532 |
Q |
| |
|
||||| |||| |
|
|
| T |
6344 |
ctcctgtgct |
6353 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 27294658 - 27294600
Alignment:
| Q |
324 |
ttgctttcaaaaactagcttggcaagagtggtttttcctaggcctcccattcctaccac |
382 |
Q |
| |
|
||||| ||||||||| |||| | ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
27294658 |
ttgctgtcaaaaactttcttgactagagtggtttttccttgtcctcccattcctaccac |
27294600 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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