View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_17 (Length: 516)
Name: NF18678_low_17
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 16 - 481
Target Start/End: Complemental strand, 41117611 - 41117146
Alignment:
| Q |
16 |
ccatgtccattagtttctcgagcagtttgttcttacgatcttttgtatcagggggcagaagttattcgaatgtacaaaaccttgttggggagtcaaggtt |
115 |
Q |
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| T |
41117611 |
ccatgtccattagtttctcgagcagtttgttcttacgatcttttgtatcagggggcagaagttattcgaatgtacaaaaccttgttggggagtcaaggtt |
41117512 |
T |
|
| Q |
116 |
tccgaaaagtaagattggttgtttatccaatgcctacgttaatcgcgtccattcaatgtcatgctactaccaatctgacgtgtttaatatagaattcaac |
215 |
Q |
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| T |
41117511 |
tccgaaaagtaagattggttgtttatccaatgcctacgttaatcgcgtccattcaatgtcatgctactaccaatctgatgtgtttaatatagaattcaac |
41117412 |
T |
|
| Q |
216 |
tctcatagattctatgtacttcagggcatggatctttattttaagagacatgatgggcaagctgtaatgtgtgatgatttttacactgccatgagagatg |
315 |
Q |
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| T |
41117411 |
tctcatagattctatgtacttcagggcatggatctttattttaagagacatgatgggcaagctgtaatgtgtgatgatttttacgctgccatgagagatg |
41117312 |
T |
|
| Q |
316 |
caaatgatgcagattttgccaatttcttattatggtttgtattttgggcttcttttccagcattatgctaatttcatactgatcgatcaactaatggaca |
415 |
Q |
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| T |
41117311 |
caaatgatgcagattttgccaatttcttattatggtttgtattttgggcttcttttccagcattatgctaatttcatacagatcgatcaactaatggaca |
41117212 |
T |
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| Q |
416 |
agtactctcaagctggggctccaattgtcaaagtaaatacttcttataatccagaaggacatacat |
481 |
Q |
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| T |
41117211 |
agtactctcaagctggggctcctgttgtcaaagtaaatacttcttataatccagaaggacatacat |
41117146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 169 - 481
Target Start/End: Complemental strand, 41105261 - 41104945
Alignment:
| Q |
169 |
caatgtcatgctactaccaatctgacgtgtttaatatagaattcaactctcatagattctatgtacttcagggcatggatctttattttaagagacatga |
268 |
Q |
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|||||||||||||| | ||||||| ||| ||||| |||||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
41105261 |
caatgtcatgctaccagcaatctggcgttcttaatttagaattcaaatctcacagattctttgtatttcagggcatggatctttattttaagagacatga |
41105162 |
T |
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| Q |
269 |
tgggcaagctgtaatgtgtgatgatttttacactgccatgagagatgcaaatgatgcagattttgccaatttcttattatggtttgtattttggg-cttc |
367 |
Q |
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| T |
41105161 |
tgggcaagctgtaacatgtgaagatttttacgctgccatgcgagatgcaaatgatgcagattttgcaaatttcttattgtggtttgtattgtgggttttc |
41105062 |
T |
|
| Q |
368 |
ttttccagca---ttatgctaatttcatactgatcgatcaactaatggacaagtactctcaagctggggctccaattgtcaaagtaaatacttcttataa |
464 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
41105061 |
ttttccagcatttttatgataatttcatactgatcgatcaactaatggacaggtactctcaagctgggactcctgttgtcaaagtaaatacttcttataa |
41104962 |
T |
|
| Q |
465 |
tccagaaggacatacat |
481 |
Q |
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||||||||||||||||| |
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| T |
41104961 |
tccagaaggacatacat |
41104945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 41105395 - 41105285
Alignment:
| Q |
18 |
atgtccattagtttctcgagcagtttgttcttacgatcttttgtatcagggggcagaagttattcgaatgtacaaaaccttgttggggagtcaaggtttc |
117 |
Q |
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||||||||||||||||||||||||| ||||||| |||| | |||| |||||||| |||||| ||||||||||||||||||||||||| |||||||| ||| |
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| T |
41105395 |
atgtccattagtttctcgagcagtt-gttcttatgatcctatgtaacagggggctgaagttgttcgaatgtacaaaaccttgttgggaagtcaagggttc |
41105297 |
T |
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| Q |
118 |
cgaaaagtaaga |
129 |
Q |
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|||||||||||| |
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| T |
41105296 |
cgaaaagtaaga |
41105285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 8187229 - 8187165
Alignment:
| Q |
128 |
gattggttgtttatccaatgcctacgttaatcgcgtccatt-caatgtcatgctactaccaatct |
191 |
Q |
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||||| |||||||||| |||||||| ||||||| ||| || |||||||||||||||| |||||| |
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| T |
8187229 |
gattgcttgtttatccgatgcctacattaatcgtgtcagttgcaatgtcatgctactaacaatct |
8187165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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