View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_low_18 (Length: 503)

Name: NF18678_low_18
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_low_18
NF18678_low_18
[»] chr3 (14 HSPs)
chr3 (17-492)||(36702820-36703295)
chr3 (193-287)||(30283614-30283708)
chr3 (194-281)||(18360068-18360154)
chr3 (182-272)||(9144144-9144234)
chr3 (193-263)||(17647752-17647821)
chr3 (193-278)||(52204745-52204830)
chr3 (195-287)||(7238865-7238957)
chr3 (215-281)||(20844741-20844808)
chr3 (218-272)||(33486858-33486912)
chr3 (208-263)||(36812582-36812637)
chr3 (206-281)||(47102063-47102138)
chr3 (204-267)||(49126387-49126450)
chr3 (216-288)||(46786909-46786981)
chr3 (193-241)||(54788189-54788237)
[»] chr5 (7 HSPs)
chr5 (141-285)||(32303607-32303751)
chr5 (195-285)||(37442503-37442591)
chr5 (195-284)||(9828263-9828352)
chr5 (216-288)||(35446947-35447019)
chr5 (150-242)||(37442576-37442667)
chr5 (194-285)||(8055241-8055332)
chr5 (231-284)||(34398125-34398178)
[»] chr1 (11 HSPs)
chr1 (191-272)||(622848-622929)
chr1 (193-268)||(14210685-14210760)
chr1 (210-283)||(43908994-43909067)
chr1 (217-288)||(44061376-44061447)
chr1 (212-281)||(42784159-42784228)
chr1 (195-263)||(3393030-3393097)
chr1 (193-272)||(6959983-6960062)
chr1 (159-224)||(52186897-52186963)
chr1 (231-288)||(51039819-51039876)
chr1 (216-288)||(9978896-9978968)
chr1 (216-268)||(27663932-27663984)
[»] chr8 (9 HSPs)
chr8 (195-285)||(157472-157562)
chr8 (193-287)||(5995179-5995273)
chr8 (139-268)||(22842145-22842275)
chr8 (214-284)||(12750259-12750329)
chr8 (197-287)||(15020034-15020123)
chr8 (150-203)||(38006563-38006617)
chr8 (193-284)||(29866766-29866857)
chr8 (216-263)||(32049069-32049117)
chr8 (157-236)||(34072906-34072985)
[»] chr2 (12 HSPs)
chr2 (150-272)||(8513959-8514081)
chr2 (194-284)||(39555913-39556002)
chr2 (182-284)||(13387358-13387459)
chr2 (193-278)||(33833351-33833436)
chr2 (225-288)||(14994742-14994805)
chr2 (143-220)||(17793874-17793951)
chr2 (217-288)||(36184327-36184398)
chr2 (191-284)||(17794033-17794126)
chr2 (193-238)||(32016418-32016463)
chr2 (195-272)||(43294558-43294634)
chr2 (143-220)||(43294640-43294717)
chr2 (139-239)||(33833422-33833521)
[»] scaffold0004 (1 HSPs)
scaffold0004 (159-286)||(130665-130792)
[»] chr6 (9 HSPs)
chr6 (191-281)||(28992363-28992453)
chr6 (193-281)||(2904762-2904850)
chr6 (193-284)||(33699397-33699488)
chr6 (193-242)||(2146812-2146861)
chr6 (235-287)||(5454862-5454914)
chr6 (193-238)||(3606991-3607036)
chr6 (213-286)||(30841208-30841281)
chr6 (150-242)||(3607019-3607110)
chr6 (231-287)||(17497728-17497783)
[»] chr4 (10 HSPs)
chr4 (164-286)||(30097447-30097568)
chr4 (139-283)||(959079-959222)
chr4 (193-284)||(42096778-42096869)
chr4 (193-284)||(36139016-36139107)
chr4 (187-281)||(43635737-43635831)
chr4 (193-268)||(37182174-37182249)
chr4 (216-288)||(23806290-23806362)
chr4 (195-242)||(50136553-50136600)
chr4 (249-285)||(29405080-29405116)
chr4 (193-241)||(30211986-30212034)
[»] chr7 (6 HSPs)
chr7 (216-284)||(30279172-30279241)
chr7 (194-281)||(3557104-3557191)
chr7 (197-283)||(5758779-5758865)
chr7 (191-284)||(3756456-3756549)
chr7 (213-286)||(33818846-33818919)
chr7 (162-239)||(41340954-41341030)
[»] scaffold0254 (1 HSPs)
scaffold0254 (193-242)||(23273-23322)
[»] scaffold0001 (1 HSPs)
scaffold0001 (217-286)||(505729-505798)


Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Complemental strand, 36703295 - 36702820
Alignment:
Q  17 atatcaaatcaatagaagtcaaagattgaatattgggatttttcaaacaaaaaagaaagggcccaacatgtggattccaagttaattagacctttcaaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36703295 atatcaaatcaatagaagtcaaagattgaatattgggattttttaaacaaaaaagaaagggcccaacatgtggattccaagttaattagacctttcaaag 36703196  T
Q  117 tgctatatgtatcccaaactgaaagataatcgttcttcttccatctgtttttgctcatttccattaaattgtcgagcgtgagttaattcacgtaggtgta 216  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  36703195 tgctatatgtatcccaaactaaaagataatcgttcttctcccatctgtttttgttcatttccgttaaattgtcgagcgtgagttaattcacgtaggtgta 36703096  T
Q  217 tttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaaccgacaagactttagccttaaattttgtt 316  Q
    || ||||||||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  36703095 ttcttcagcgtgaattaactcacgtaggacgggaatgagcaaaaacatatgagagatgaacaattctcaaaccgacgagactttagccttaaattttgtt 36702996  T
Q  317 tccttggttttattgaatagnnnnnnngaaaaataaatgaagttctatcatattaattttgattcttatcaacttgggtcacatgtgcaacatataggat 416  Q
    | ||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  36702995 tgcttggttttattgaatagtttttttgaaaaataaatgaagctctatcatattaattttgattcttatcaacttgggtcacatgtgcaacatatagtat 36702896  T
Q  417 ccgttattttctctcatgtcaaaagaaaagaaaaatcattagttatattctagttatctttttgactacctttctt 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36702895 ccgttattttctctcatgtcaaaagaaaagaaaaatcattagttatattctagttatctttttgactacctttctt 36702820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 30283614 - 30283708
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaa 287  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||||||| |||||||  |||||||||||  | ||| |||| || |||||||||||    
T  30283614 cgtgagttaattcacgttggtgtatttttcagcatgatttaactcacataagacggaaatgagcaaaagtaaatgagagaagatcaattctcaaa 30283708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 194 - 281
Target Start/End: Complemental strand, 18360154 - 18360068
Alignment:
Q  194 gtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaatt 281  Q
    ||||||||| ||||| ||||||||||| |||||||| |||||| |||||| ||| ||||||||||||||||||| |||| || |||||    
T  18360154 gtgagttaactcacgcaggtgtatttt-cagcgtgagttaacttacgtaaaacgagaatgagcaaaaacagatgagagaagagcaatt 18360068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 9144144 - 9144234
Alignment:
Q  182 aaattgtcgagcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggaga 272  Q
    |||| ||||||||||| |||| ||| | | ||||||||| |||||| |||||||||||||||| ||  ||||| |||||||||||| ||||    
T  9144144 aaatagtcgagcgtgaattaactcatgcaagtgtattttccagcgtaaattaactcacgtaaggcggaaatgaacaaaaacagatgagaga 9144234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 193 - 263
Target Start/End: Original strand, 17647752 - 17647821
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaaca 263  Q
    |||||||||| ||||||||||| ||||| || ||||| ||||||||||||| ||| |||||||||||||||    
T  17647752 cgtgagttaactcacgtaggtgcatttt-caacgtgatttaactcacgtaacacgagaatgagcaaaaaca 17647821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 278
Target Start/End: Original strand, 52204745 - 52204830
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaaca 278  Q
    |||||| ||| ||| |||| | ||||||||||||||  |||||||||||| |||  ||||||||||||||| |||||||| |||||    
T  52204745 cgtgagctaactcaggtagatatatttttcagcgtgggttaactcacgtaggacaagaatgagcaaaaacatatgggagaagaaca 52204830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 195 - 287
Target Start/End: Complemental strand, 7238957 - 7238865
Alignment:
Q  195 tgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaa 287  Q
    |||||||| ||||||||||| |||||||| ||||| |||| ||||||  || |||||| | ||||||  ||||||||| || |||||||||||    
T  7238957 tgagttaagtcacgtaggtgcatttttcaacgtgagttaaatcacgttggatgtgaattaacaaaaatggatgggagaagagcaattctcaaa 7238865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 20844808 - 20844741
Alignment:
Q  215 tatttttcagcgtgaattaactcacgta-agacgtgaatgagcaaaaacagatgggagatgaacaatt 281  Q
    ||||||||||||||| |||||||||||| | ||||||||||||||||||| | |||||| || |||||    
T  20844808 tatttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaaagggagaagagcaatt 20844741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 33486912 - 33486858
Alignment:
Q  218 ttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggaga 272  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||| || |||||    
T  33486912 ttttcagcgtgaattaactcacgtaaagcgtaaatgagcaaaaacatataggaga 33486858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 36812637 - 36812582
Alignment:
Q  208 gtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaaca 263  Q
    |||||||||||||||||||| |||||||||| |||  ||| ||||||| |||||||    
T  36812637 gtaggtgtatttttcagcgtaaattaactcatgtagcacgagaatgaggaaaaaca 36812582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 47102063 - 47102138
Alignment:
Q  206 acgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaatt 281  Q
    ||||| ||||||||||||||||||||||| ||||||  |||  ||||||| ||||||| || ||||| || |||||    
T  47102063 acgtatgtgtatttttcagcgtgaattaattcacgttggacaagaatgaggaaaaacatataggagaagagcaatt 47102138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 267
Target Start/End: Original strand, 49126387 - 49126450
Alignment:
Q  204 tcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatg 267  Q
    ||||||| |||||||||||||| ||| ||||||||| || ||||  |||||||| |||||||||    
T  49126387 tcacgtaagtgtatttttcagcatgagttaactcacataggacggaaatgagcataaacagatg 49126450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 46786909 - 46786981
Alignment:
Q  216 atttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaac 288  Q
    |||||||| ||||| |||||||| |||  || || ||||||||||||| |||||||| || ||||| ||||||    
T  46786909 atttttcaacgtgagttaactcaagtagcacatgtatgagcaaaaacaaatgggagaagagcaattatcaaac 46786981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 54788189 - 54788237
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgt 241  Q
    ||||||||||||||| |||||| |||||||| ||||| |||||| ||||    
T  54788189 cgtgagttaattcacataggtgcatttttcaacgtgagttaacttacgt 54788237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 141 - 285
Target Start/End: Original strand, 32303607 - 32303751
Alignment:
Q  141 gataatcgttcttcttccatctgtttttgctcatttccattaaatt-gtcgagcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcac 239  Q
    |||||| | |||||||||||||| |||||||||||| | | ||| | |||||||||||||||| ||||| | ||||||||| |||||||| |||||||||    
T  32303607 gataattgctcttcttccatctgattttgctcattttcgtcaaaatagtcgagcgtgagttaactcacgcatgtgtatttt-cagcgtgagttaactcac 32303705  T
Q  240 gtaagacgtgaatgagcaaaaacagatgggagatgaacaattctca 285  Q
     || ||||  ||||||||||||| ||||||||| || |||||||||    
T  32303706 ataggacggaaatgagcaaaaacggatgggagaagagcaattctca 32303751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 37442591 - 37442503
Alignment:
Q  195 tgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctca 285  Q
    |||||||| |||||||||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||  |||| ||||||||||||    
T  37442591 tgagttaactcacgtaggtgtatttttcagcgtgagttaactcatgtaggacgggaatgagcaaaaacagat--gagaagaacaattctca 37442503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 9828263 - 9828352
Alignment:
Q  195 tgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctc 284  Q
    |||||||| |||||||||||||||||||||||||| |||| |||||||   ||  ||||||||||||| ||| ||||| |||||||||||    
T  9828263 tgagttaactcacgtaggtgtatttttcagcgtgagttaaatcacgtagagcggaaatgagcaaaaactgataggagaagaacaattctc 9828352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 35447019 - 35446947
Alignment:
Q  216 atttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaac 288  Q
    |||||| ||||||| ||||||||||||  ||||||||||||||||||| |||||||| || ||||||||||||    
T  35447019 atttttaagcgtgagttaactcacgtagcacgtgaatgagcaaaaacaaatgggagaagagcaattctcaaac 35446947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 37442667 - 37442576
Alignment:
Q  150 tcttcttccatctgtttttgctcatttccattaaattgtcgagcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgta 242  Q
    |||||||||||||||||||||||||| || | |||| | |||||||||||||| ||| | || |||| |||||| | ||| ||||||||||||    
T  37442667 tcttcttccatctgtttttgctcattcccgtcaaatagccgagcgtgagttaactcatgcagatgta-ttttcaacatgagttaactcacgta 37442576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 285
Target Start/End: Original strand, 8055241 - 8055332
Alignment:
Q  194 gtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctca 285  Q
    |||| |||| |||||||| ||||||||||||||||| |||||| | ||  |||| |||||| |||||||| ||| |||| ||  ||||||||    
T  8055241 gtgaattaactcacgtagatgtatttttcagcgtgagttaactaaagttggacgggaatgaacaaaaacaaatgagagaagattaattctca 8055332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 34398125 - 34398178
Alignment:
Q  231 ttaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctc 284  Q
    |||||||||||||||||  ||||| ||||||||||||| ||| || ||||||||    
T  34398125 ttaactcacgtaagacggaaatgaccaaaaacagatggaagaagagcaattctc 34398178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 622929 - 622848
Alignment:
Q  191 agcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggaga 272  Q
    |||||||||||| |||||||||||||||||||| ||||| |||||||||||| |||| ||||||||||||||| ||||||||    
T  622929 agcgtgagttaactcacgtaggtgtatttttcaacgtgagttaactcacgtaggacgggaatgagcaaaaacaaatgggaga 622848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 14210685 - 14210760
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgg 268  Q
    |||||||||| |||| ||||||||||||||||||||| ||| ||||||||||| | ||||||||||||| ||||||    
T  14210685 cgtgagttaactcacataggtgtatttttcagcgtgagttatctcacgtaagatgggaatgagcaaaaatagatgg 14210760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 43909067 - 43908994
Alignment:
Q  210 aggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattct 283  Q
    ||||||||||||||||||||  |||||||||||  ||  |||||||||||||| ||||||||| || |||||||    
T  43909067 aggtgtatttttcagcgtgagataactcacgtagaacaggaatgagcaaaaactgatgggagaagagcaattct 43908994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 44061376 - 44061447
Alignment:
Q  217 tttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaac 288  Q
    ||||||||||||| |||||||| |||  ||| ||||||||||||||| | |||||| || ||||||||||||    
T  44061376 tttttcagcgtgagttaactcatgtagcacgggaatgagcaaaaacaaacgggagaagagcaattctcaaac 44061447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 42784228 - 42784159
Alignment:
Q  212 gtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaatt 281  Q
    ||||||||||||| ||||||||||||||||   ||||||||||| ||||||| ||| |||| || |||||    
T  42784228 gtgtatttttcagtgtgaattaactcacgttgaacgtgaatgagaaaaaacatatgagagaagagcaatt 42784159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 195 - 263
Target Start/End: Original strand, 3393030 - 3393097
Alignment:
Q  195 tgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaaca 263  Q
    |||||||| ||||||||||||| |||||||||||| |||||||| |||| | | ||| |||||||||||    
T  3393030 tgagttaactcacgtaggtgta-ttttcagcgtgagttaactcatgtaataggggaaagagcaaaaaca 3393097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 6960062 - 6959983
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggaga 272  Q
    |||||||||| | ||||||||||||||||||| |||| |||||| ||||  || | | |||||||||| || ||||||||    
T  6960062 cgtgagttaacttacgtaggtgtatttttcagtgtgagttaacttacgtttgatggggatgagcaaaagcatatgggaga 6959983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 52186963 - 52186897
Alignment:
Q  159 atctgtttttgctcatttccattaaatt-gtcgagcgtgagttaattcacgtaggtgtatttttcag 224  Q
    ||||||||||||||| |||||| ||| | | |||||||||||||| ||||| |||||||||| ||||    
T  52186963 atctgtttttgctcacttccatcaaaatagccgagcgtgagttaactcacgcaggtgtatttatcag 52186897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 288
Target Start/End: Complemental strand, 51039876 - 51039819
Alignment:
Q  231 ttaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaac 288  Q
    |||||||| |||| ||| ||||||||||||||| || ||||  |||||||||||||||    
T  51039876 ttaactcatgtaacacgggaatgagcaaaaacaaataggaggagaacaattctcaaac 51039819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 9978896 - 9978968
Alignment:
Q  216 atttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaac 288  Q
    ||||||||| |||| ||||||||||||  | | ||||||||||||| | |||| ||| || ||||||||||||    
T  9978896 atttttcagtgtgagttaactcacgtagtatgggaatgagcaaaaataaatggaagaagagcaattctcaaac 9978968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 27663984 - 27663932
Alignment:
Q  216 atttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgg 268  Q
    |||||||||||||| ||| ||||||||  ||| ||||||||||||||| ||||    
T  27663984 atttttcagcgtgagttagctcacgtagcacgggaatgagcaaaaacaaatgg 27663932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 157562 - 157472
Alignment:
Q  195 tgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctca 285  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||| ||||| || | || |||||||||    
T  157562 tgagttaattcacgtaggtgtatttttcagcgtgagttaactcacgttagatgggaatgagcaaaaatagatgtgaaaagagcaattctca 157472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 5995179 - 5995273
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaa 287  Q
    |||||||||| || | || |||||||||||||||||| |||||||||||   || |||||||||||||| |||||||||| || |||||||||||    
T  5995179 cgtgagttaactcgcatatgtgtatttttcagcgtgagttaactcacgttgaacatgaatgagcaaaaaaagatgggagaagagcaattctcaaa 5995273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 139 - 268
Target Start/End: Original strand, 22842145 - 22842275
Alignment:
Q  139 aagataatcgttcttcttccatctgtttttgctcatttccattaaatt-gtcgagcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactc 237  Q
    |||||||| |||||||| |||||||||||| |||||| || | ||| | |||||||||||||||| |||||||  |||||||||  || ||  |||||||    
T  22842145 aagataattgttcttctcccatctgttttttctcattcccgtcaaaatagtcgagcgtgagttaactcacgtaaatgtatttttttgcatgcgttaactc 22842244  T
Q  238 acgtaagacgtgaatgagcaaaaacagatgg 268  Q
    |||||||  |  |||||| ||||||||||||    
T  22842245 acgtaaggtggaaatgagtaaaaacagatgg 22842275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 12750259 - 12750329
Alignment:
Q  214 gtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctc 284  Q
    |||||||||||| ||| |||||||||||| |  | |||||||||||||||||||||||| || ||||||||    
T  12750259 gtatttttcagcttgagttaactcacgtagggtgggaatgagcaaaaacagatgggagaagagcaattctc 12750329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 287
Target Start/End: Complemental strand, 15020123 - 15020034
Alignment:
Q  197 agttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaa 287  Q
    |||||| | ||| ||||||||||| || |||||||||||||| ||  ||  | ||||||||||||||||| ||||| || |||||||||||    
T  15020123 agttaacttacgcaggtgtatttt-caacgtgaattaactcatgttggatataaatgagcaaaaacagataggagaagagcaattctcaaa 15020034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 38006617 - 38006563
Alignment:
Q  150 tcttcttccatctgtttttgctcatttccatt-aaattgtcgagcgtgagttaat 203  Q
    |||||| ||||||||||||||||||| || || |||| |||||||||||||||||    
T  38006617 tcttctcccatctgtttttgctcattcccgttaaaatagtcgagcgtgagttaat 38006563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 284
Target Start/End: Complemental strand, 29866857 - 29866766
Alignment:
Q  193 cgtgagttaattcac-gtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctc 284  Q
    |||||||||| |||| ||||||| |||||| | | ||| ||||||||||| |||||  |||||||||||  | |||||||| |||||||||||    
T  29866857 cgtgagttaactcactgtaggtgcattttt-atcctgatttaactcacgttagacggaaatgagcaaaagtaaatgggagaagaacaattctc 29866766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 32049117 - 32049069
Alignment:
Q  216 atttttcagcgtgaattaactcacgta-agacgtgaatgagcaaaaaca 263  Q
    |||||||||||||| |||||||||||| | |||||||| ||||||||||    
T  32049117 atttttcagcgtgagttaactcacgtagacacgtgaataagcaaaaaca 32049069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 34072985 - 34072906
Alignment:
Q  157 ccatctgtttttgctcatttccattaaatt-gtcgagcgtgagttaattcacgtaggtgtatttttcagcgtgaattaact 236  Q
    ||||||| ||||||||||| || ||||| | | ||||| |||||||| ||||||||||||| || ||||||||| ||||||    
T  34072985 ccatctggttttgctcattcccgttaaaataggcgagcatgagttaactcacgtaggtgta-ttctcagcgtgagttaact 34072906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 8513959 - 8514081
Alignment:
Q  150 tcttcttccatctgtttttgctcatttccattaaattgtcgagcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtg 249  Q
    |||||| ||||||||||||| ||||| |  | ||||  ||||| ||||||||| |||||||||||||||||||| ||| | ||||||||||||  |||      
T  8513959 tcttctcccatctgtttttgttcattcctgtcaaataatcgagtgtgagttaactcacgtaggtgtatttttcaacgtaatttaactcacgtagtacgga 8514058  T
Q  250 aatgagcaaaaacagatgggaga 272  Q
    |||||||||||||||||||||||    
T  8514059 aatgagcaaaaacagatgggaga 8514081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 284
Target Start/End: Complemental strand, 39556002 - 39555913
Alignment:
Q  194 gtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctc 284  Q
    ||||||| | |||||||||||||||||| ||||| | |||||||||||| ||| ||||||| |||||||||||| |||| |||||||||||    
T  39556002 gtgagttgactcacgtaggtgtattttt-agcgtaagttaactcacgtaggacatgaatgaacaaaaacagatgtgagaagaacaattctc 39555913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 284
Target Start/End: Original strand, 13387358 - 13387459
Alignment:
Q  182 aaattgtcgagcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaatt 281  Q
    |||| ||| |||||||||||| ||||||| ||||||||| || | ||| |||||||||||| |||| |||||| |||||| ||||| |||| ||||||||    
T  13387358 aaatagtcaagcgtgagttaactcacgtatgtgtatttt-catcatgagttaactcacgtaggacgagaatgaacaaaaatagatgagagaagaacaatt 13387456  T
Q  282 ctc 284  Q
    |||    
T  13387457 ctc 13387459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 33833436 - 33833351
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaaca 278  Q
    |||||||||| |||| || |||||||||| ||||||| |||| ||||||||||| | |||||| ||||||| ||| |||| |||||    
T  33833436 cgtgagttaactcacatatgtgtattttttagcgtgatttaattcacgtaagacataaatgagtaaaaacatatgagagaagaaca 33833351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 14994805 - 14994742
Alignment:
Q  225 cgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaac 288  Q
    ||||| ||||||||||||  ||| ||||||||||||||| |||||||| || ||||||||||||    
T  14994805 cgtgagttaactcacgtaccacgggaatgagcaaaaacaaatgggagaagagcaattctcaaac 14994742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 17793874 - 17793951
Alignment:
Q  143 taatcgttcttcttccatctgtttttgctcatttccattaaattgtcgagcgtgagttaattcacgtaggtgtatttt 220  Q
    |||| ||||||||||||| |||||||  |||||||| |||||| ||||||||| |||||| |||  || |||||||||    
T  17793874 taattgttcttcttccatatgtttttattcatttccgttaaatagtcgagcgtaagttaactcatatatgtgtatttt 17793951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 36184327 - 36184398
Alignment:
Q  217 tttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaac 288  Q
    ||||||||||||| ||||||||  ||  ||| ||||||||||||||| ||||| || || ||||||||||||    
T  36184327 tttttcagcgtgagttaactcatatagcacgagaatgagcaaaaacaaatgggtgaagagcaattctcaaac 36184398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 284
Target Start/End: Original strand, 17794033 - 17794126
Alignment:
Q  191 agcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctc 284  Q
    |||||||||||| | |  ||||||||||||||||||| | |||||| || || || | |||||||  ||||||||||||| | || ||||||||    
T  17794033 agcgtgagttaacttatataggtgtatttttcagcgtaagttaactaacataggatgagaatgagtgaaaacagatgggaaaagagcaattctc 17794126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 32016463 - 32016418
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactca 238  Q
    |||||||||| ||||||||||||||||||||||   ||||||||||    
T  32016463 cgtgagttaactcacgtaggtgtatttttcagccgaaattaactca 32016418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 43294634 - 43294558
Alignment:
Q  195 tgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggaga 272  Q
    |||||||||||||||| ||||| |||||||| | | ||||||||||||  |||  ||| |||||||||| ||||||||    
T  43294634 tgagttaattcacgtaagtgta-ttttcagcattagttaactcacgtagaacggaaataagcaaaaacaaatgggaga 43294558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 43294717 - 43294640
Alignment:
Q  143 taatcgttcttcttccatctgtttttgctcatttccattaaattgtcgagcgtgagttaattcacgtaggtgtatttt 220  Q
    |||| ||||||||  ||||||||||| ||||||||| | |||| || ||||||||||| | ||| |||| ||||||||    
T  43294717 taattgttcttctctcatctgtttttactcatttccgtcaaatagttgagcgtgagttgactcatgtagatgtatttt 43294640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 33833521 - 33833422
Alignment:
Q  139 aagataatcgttcttcttccatctgtttttgctcatttccattaaattgtcgagcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactca 238  Q
    |||||||| | |||||| |||||||||||| |||||| |  | |||| | |||||||| ||||| ||| | |||||||||||| | ||||| ||||||||    
T  33833521 aagataattgctcttctcccatctgtttttactcattcctgtcaaatagccgagcgtgggttaactcatgcaggtgtattttt-aacgtgagttaactca 33833423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 159 - 286
Target Start/End: Complemental strand, 130792 - 130665
Alignment:
Q  159 atctgtttttgctcatttccattaaattgtcgagcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaa 258  Q
    ||||||||||| ||||| || | ||||   ||| |||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||  |||||| ||    
T  130792 atctgtttttgttcattcccgtcaaataaccgaacgtgagttaactcacgcaggtgtatttttcagtgtgagttaactcacgtaagacggaaatgagtaa 130693  T
Q  259 aaacagatgggagatgaacaattctcaa 286  Q
    ||||| | |||||| || ||||||||||    
T  130692 aaacatacgggagaagagcaattctcaa 130665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 28992453 - 28992363
Alignment:
Q  191 agcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgta-agacgtgaatgagcaaaaacagatgggagatgaacaatt 281  Q
    |||||||||||| ||||||| |||||||||||||||||| |||||||||||| ||| | ||||||| |||||||||||||||| || |||||    
T  28992453 agcgtgagttaactcacgtatgtgtatttttcagcgtgagttaactcacgtagaga-gggaatgagtaaaaacagatgggagaagagcaatt 28992363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 193 - 281
Target Start/End: Original strand, 2904762 - 2904850
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaatt 281  Q
    |||||||||| ||||||||||||||||||| |||||| |||||||||||  || | |||||||||||| || ||| |||| || |||||    
T  2904762 cgtgagttaactcacgtaggtgtatttttctgcgtgagttaactcacgttggaagagaatgagcaaaatcaaatgagagaagagcaatt 2904850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 33699397 - 33699488
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctc 284  Q
    |||||||||| ||||||||||| |||||||| ||| | ||||||  |||  |||| |||||||||||||||||||| ||| || ||||||||    
T  33699397 cgtgagttaactcacgtaggtgaatttttcaacgtaagttaacttgcgttggacgagaatgagcaaaaacagatggaagaagagcaattctc 33699488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 2146812 - 2146861
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgta 242  Q
    |||||||||| | |||||||||| ||||||| ||||||||||||||||||    
T  2146812 cgtgagttaacttacgtaggtgtgtttttcaacgtgaattaactcacgta 2146861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 5454862 - 5454914
Alignment:
Q  235 ctcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaa 287  Q
    ||||||||||||| ||||||| |||||||||| ||||| || |||||||||||    
T  5454862 ctcacgtaagacgggaatgaggaaaaacagataggagaagagcaattctcaaa 5454914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 3607036 - 3606991
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactca 238  Q
    |||||||||| ||||||||||||||||| |||||| | ||||||||    
T  3607036 cgtgagttaactcacgtaggtgtattttccagcgtaagttaactca 3606991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 30841208 - 30841281
Alignment:
Q  213 tgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaa 286  Q
    ||||||||||||  ||| ||||||||||||  ||  |||| |||||||||||||| |||| || ||||||||||    
T  30841208 tgtatttttcagtatgagttaactcacgtagaacaggaataagcaaaaacagatgtgagaagagcaattctcaa 30841281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 3607110 - 3607019
Alignment:
Q  150 tcttcttccatctgtttttgctcatttccattaaattgtcgagcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgta 242  Q
    |||||| |||||| ||||||||||||| | | |||| || |||||||| || | ||||| | |||||||||| | ||||| ||||||||||||    
T  3607110 tcttctcccatctatttttgctcattttcgtaaaatagttgagcgtgaattgactcacgcatgtgtattttt-aacgtgagttaactcacgta 3607019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 17497728 - 17497783
Alignment:
Q  231 ttaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaa 287  Q
    ||||||||||||||| | |||||||| ||||||||||| ||| || |||||||||||    
T  17497728 ttaactcacgtaagatgagaatgagc-aaaacagatggaagaagagcaattctcaaa 17497783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 164 - 286
Target Start/End: Original strand, 30097447 - 30097568
Alignment:
Q  164 tttttgctcatttccattaaattgtcgagcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaaca 263  Q
    ||||||||||||||||| |||| |||||||||||||||| ||||| | |||||||||| | ||||  ||||||||||||  | |  |||||| |||| ||    
T  30097447 tttttgctcatttccatcaaatagtcgagcgtgagttaactcacgca-gtgtattttttaacgtgggttaactcacgtagaatggaaatgagtaaaagca 30097545  T
Q  264 gatgggagatgaacaattctcaa 286  Q
    ||||||||| || ||||||||||    
T  30097546 gatgggagaagagcaattctcaa 30097568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 283
Target Start/End: Original strand, 959079 - 959222
Alignment:
Q  139 aagataatcgttcttcttccatctgtttttgctcatttccattaaattgtcgagcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactca 238  Q
    |||||||| | |||||| |||||| ||||||||||||||| ||||||  |||||||| |||||| | | | ||||||| |||||||||| | ||||||||    
T  959079 aagataattgctcttctcccatctatttttgctcatttccgttaaataatcgagcgtcagttaactgatgcaggtgta-ttttcagcgtaagttaactca 959177  T
Q  239 cgtaagacgtgaatgagcaaaaacagatgggagatgaacaattct 283  Q
    |||| | ||  ||||| |||||||| ||| |||| || |||||||    
T  959178 cgtagggcggaaatgaacaaaaacaaatgagagaagagcaattct 959222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 42096778 - 42096869
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctc 284  Q
    |||||||||| |||| |||||| |||||||||||||| |||||||||||  ||   ||||||||||||| |||||||||| || ||||||||    
T  42096778 cgtgagttaactcacataggtgcatttttcagcgtgagttaactcacgttggataggaatgagcaaaaatagatgggagaagagcaattctc 42096869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 284
Target Start/End: Original strand, 36139016 - 36139107
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctc 284  Q
    |||||||||| ||| ||| ||| |||||||||||||| |||||||| ||  || | ||||||||||||||| |||||||| || ||||||||    
T  36139016 cgtgagttaactcatgtatgtgaatttttcagcgtgagttaactcatgttggatgagaatgagcaaaaacatatgggagaagagcaattctc 36139107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 187 - 281
Target Start/End: Complemental strand, 43635831 - 43635737
Alignment:
Q  187 gtcgagcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaatt 281  Q
    |||||| ||||||||| | |  |||||||||||| |||||||| |||||||| ||| ||||  |||||||||||| |||||||||| || |||||    
T  43635831 gtcgagagtgagttaacttaaataggtgtattttccagcgtgagttaactcatgtaggacggaaatgagcaaaaatagatgggagaagagcaatt 43635737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 268
Target Start/End: Complemental strand, 37182249 - 37182174
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgg 268  Q
    |||||||||| |||||||||||||||||||| | ||| |||||||| ||  || |||||||| |||||||| ||||    
T  37182249 cgtgagttaactcacgtaggtgtatttttcaacttgagttaactcatgttcgaggtgaatgaacaaaaacaaatgg 37182174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 23806290 - 23806362
Alignment:
Q  216 atttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaaac 288  Q
    |||||||||||||||||||||||||||  ||   || ||||||||||| |||||| |  ||||||||||||||    
T  23806290 atttttcagcgtgaattaactcacgtatcacaataacgagcaaaaacaaatgggaaaaaaacaattctcaaac 23806362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 50136553 - 50136600
Alignment:
Q  195 tgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgta 242  Q
    |||||||| |||| |||||||||||||||| |||| ||||||||||||    
T  50136553 tgagttaactcacataggtgtatttttcagtgtgagttaactcacgta 50136600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 29405116 - 29405080
Alignment:
Q  249 gaatgagcaaaaacagatgggagatgaacaattctca 285  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  29405116 gaatgagcaaaaacagataggagaagaacaattctca 29405080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 30211986 - 30212034
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgt 241  Q
    |||||||||| ||||||||||| ||||| ||| |||| |||||||||||    
T  30211986 cgtgagttaactcacgtaggtgcattttccagtgtgagttaactcacgt 30212034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 30279172 - 30279241
Alignment:
Q  216 atttttcagcgtgaattaactcacgta-agacgtgaatgagcaaaaacagatgggagatgaacaattctc 284  Q
    |||||||||||||| |||||||||||| | ||||||||||||||||||| |||||||| || ||||||||    
T  30279172 atttttcagcgtgagttaactcacgtagacacgtgaatgagcaaaaacaaatgggagaagatcaattctc 30279241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 281
Target Start/End: Complemental strand, 3557191 - 3557104
Alignment:
Q  194 gtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaatt 281  Q
    ||||||||  ||||||||||| |||||||||||||| ||||||||||||  |||  ||| |||||||| | |||||||| ||||||||    
T  3557191 gtgagttagctcacgtaggtgcatttttcagcgtgagttaactcacgtagcacggtaataagcaaaaataaatgggagaagaacaatt 3557104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 283
Target Start/End: Complemental strand, 5758865 - 5758779
Alignment:
Q  197 agttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattct 283  Q
    |||||| ||| ||| ||| |||||||||||||| |||||| |||||  ||| ||||||||||||||| | |||||| || |||||||    
T  5758865 agttaactcatgtaagtgcatttttcagcgtgagttaactaacgtagcacgggaatgagcaaaaacaaaagggagaagagcaattct 5758779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 284
Target Start/End: Original strand, 3756456 - 3756549
Alignment:
Q  191 agcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctc 284  Q
    |||||||||||| ||| |||||||||||| | ||||||| ||| | ||||||   |  |||||||||||||||| ||||||| || ||||||||    
T  3756456 agcgtgagttaactcatgtaggtgtatttcttagcgtgagttagcacacgtagagcaggaatgagcaaaaacaggtgggagaagagcaattctc 3756549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 33818919 - 33818846
Alignment:
Q  213 tgtatttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaa 286  Q
    ||||||||||||||||| |||||||||||| |||| || ||   |||||||||||| ||| || ||||||||||    
T  33818919 tgtatttttcagcgtgagttaactcacgtaggacgggagtggaaaaaaacagatggaagaagagcaattctcaa 33818846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 41341030 - 41340954
Alignment:
Q  162 tgtttttgctcatttccattaaattgtcgagcgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcac 239  Q
    ||||||| ||||||||||| |||| || || |||||||||| ||| |||  ||||||||||| ||||| |||||||||    
T  41341030 tgttttttctcatttccatcaaatagttgaacgtgagttaactcaggtaaatgtatttttca-cgtgagttaactcac 41340954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 23273 - 23322
Alignment:
Q  193 cgtgagttaattcacgtaggtgtatttttcagcgtgaattaactcacgta 242  Q
    |||||||||| | |||||||||| ||||||| ||||||||||||||||||    
T  23273 cgtgagttaacttacgtaggtgtgtttttcaacgtgaattaactcacgta 23322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 505729 - 505798
Alignment:
Q  217 tttttcagcgtgaattaactcacgtaagacgtgaatgagcaaaaacagatgggagatgaacaattctcaa 286  Q
    ||||| ||||||| |||||||||  |||| | ||||||||||||||||| |||||| |||||||| ||||    
T  505729 ttttttagcgtgagttaactcacaaaagatgagaatgagcaaaaacagaagggagaagaacaattatcaa 505798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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