View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_19 (Length: 498)
Name: NF18678_low_19
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Complemental strand, 30383434 - 30382944
Alignment:
| Q |
18 |
taaaagaagtggtgaagaaaagtttaggctttggagaagtgaacttgttgcaagaaatagttttgagcaggttccaatgagtgctaattcaatggctcaa |
117 |
Q |
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| T |
30383434 |
taaaagaagtggtgaagaaaagtttaggctttggagaagtgaacttgttgcaagaaatagttttgagcaggttccaatgagtgctaattcaatggctcaa |
30383335 |
T |
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| Q |
118 |
gcacagttgatattgaacatgtattcaccagctcatggttatagtcttgctcaagttgatggcatgttaaggcttggttggaaagatactagtttgtata |
217 |
Q |
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| T |
30383334 |
gcacagttgatattgaacatgtattcaccagctcatggttatagtcttgctcaagttgatggcatgttaaggcttggttggaaagatactagtttgtata |
30383235 |
T |
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| Q |
218 |
cagcttcttcttggacttgtagaacttctaggtagctttgtttaaggttgtaaggtttttgagtttcttaatttgtttgctttgaggtaggtaat----- |
312 |
Q |
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| T |
30383234 |
cagcttcttcttggacttgtagaacttctaggtagctttgtttaaggttgtaaggtttttgagtttcttaatttgtttgctttgaggtaggtaattgagt |
30383135 |
T |
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| Q |
313 |
-------tgagcaaatttagtagaagtgatttgatcgtaaacaattattccgtaaccatatatacatgatttatttatacatgtttaaatttaaaggagt |
405 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30383134 |
tgtaaattgagcaaatttagtagaagtgatttgattgtaaacaattattctgtaaccatatatacatgatttatttatacatgtttaaatttaaaggagt |
30383035 |
T |
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| Q |
406 |
tcgagttctatggactaagaaaaagcatcacggtatgtgtgtgtataagtgactcatatttatgcttctgattacatacatttgcaacccatt |
498 |
Q |
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| T |
30383034 |
tcgaattttatagactaagaaaaagcatcacggta--tatgtgtctaagtgactcatatttatgcctctgattacatacatttgcaacccatt |
30382944 |
T |
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