View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_20 (Length: 491)
Name: NF18678_low_20
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 413241 - 413018
Alignment:
| Q |
18 |
acatcaaattatcattaatggtaagcctgccattttcaagtttttctgaaaggatggatatttcttcatcaatactatttagttttagttcactgttcga |
117 |
Q |
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| T |
413241 |
acatcaaattatcattaatggtaagcctgccattttcaagtttttctgaaaggatggatatttcttaatca---ctatt------------actgttcga |
413157 |
T |
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| Q |
118 |
atctggatatagatagacagcttttgtcgcaattatagacagcaattcatgctccgtacttccgtcatcgatttatgttatacaatttagtactcctaag |
217 |
Q |
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| T |
413156 |
atctggatatagataaacagcttttgtcgcaattatagacaacaattcatgctccgtacttccgtcatcgatttatgttatacaatttagtcctcttaag |
413057 |
T |
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| Q |
218 |
ctaaatcactgcctaattaacttggaggcatatctattt |
256 |
Q |
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| T |
413056 |
ctaaatcactgcctaattaacttggaggcatatctattt |
413018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 377 - 484
Target Start/End: Complemental strand, 412121 - 412011
Alignment:
| Q |
377 |
taaagtgaaaactcattttagtccttaacaccgactagaagactcaatttggtcaacgaaatagaactttaagtccatgacaa---aaaaggggacaact |
473 |
Q |
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| T |
412121 |
taaagtgaaaactcattttagtccttaacaacgactagaagactcaatttggtcaacgaaatataactttaagtccatgacaaaaaaaaaggggacaact |
412022 |
T |
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| Q |
474 |
tatctgtgctc |
484 |
Q |
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|||| |||||| |
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| T |
412021 |
tatccgtgctc |
412011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 311
Target Start/End: Complemental strand, 412501 - 412473
Alignment:
| Q |
283 |
tatctaattatgatatcttacgagcaagc |
311 |
Q |
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| T |
412501 |
tatctaattatgatatcttacgagcaagc |
412473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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