View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_23 (Length: 466)
Name: NF18678_low_23
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 13 - 448
Target Start/End: Original strand, 8612253 - 8612689
Alignment:
| Q |
13 |
aatattctcacaagttgagtcaacatatatgattggtaaaaaatgacaatctgtatttatagaaaagcnnnnnnnnn-gtaaaatttgcacaagtataca |
111 |
Q |
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| T |
8612253 |
aatattctcacaagttgagtcaacatatatgattggtaaaaaatgacaatctgtatttatagaaaagcaaaaaaaaaagtaaaatttgcacaagtataca |
8612352 |
T |
|
| Q |
112 |
atatctactgtcacaatttcgttgaatcacaaatgttcctcttctctagtctttatttctgggaacattctttagccattcaacaacttctctgatggtt |
211 |
Q |
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| T |
8612353 |
atatctactgtcacaatttcgttgaattacaaatgttcctcttctctagtctttatttctgggaacattctttagccattcaacaacttctctgatggtt |
8612452 |
T |
|
| Q |
212 |
ggtctcttgaaaggattcatattaacacacatgcatgctatatcaagtacttgcagcatctctccttcaaatcccttccctcgtagatttgagtcgaata |
311 |
Q |
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| T |
8612453 |
ggtctcttgaaaggattcatattaacacacatgcatgctatatcaagtacttgcagcatctctccttcaaatcccttccctcgtagatttgagtcgaata |
8612552 |
T |
|
| Q |
312 |
cttgttcttgttttccttcgtttttcatctgttgaacccaactgaccaactcccttgaaattttaggcttgcatacatccataggtctccttccggtgag |
411 |
Q |
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| T |
8612553 |
cttgttcttgttttccttcgtttttcatctgttgaacccaactgaccaactcccttgaaattttaggcttgcatacatccataggtctccttccggtgag |
8612652 |
T |
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| Q |
412 |
aagctcaagcattacaacaccaaagctgtacacatct |
448 |
Q |
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| T |
8612653 |
aagctcaagcattacaacaccaaagctgtacacatct |
8612689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 16082273 - 16082155
Alignment:
| Q |
135 |
gaatcacaaatgttcctcttctctagtctttatttctgggaacattcttta----gccattcaacaacttctctgatggttggtctcttgaaaggattca |
230 |
Q |
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| T |
16082273 |
gaatcacaaatgttcctcttctctagttgttatttctatgaacattctttatttagccattcaacaaattctctgatgattggtctcttgaaaggatcca |
16082174 |
T |
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| Q |
231 |
tattaacacacatgcatgc |
249 |
Q |
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| T |
16082173 |
tgttgactcacatgcatgc |
16082155 |
T |
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