View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_24 (Length: 463)
Name: NF18678_low_24
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 166 - 459
Target Start/End: Original strand, 33422501 - 33422795
Alignment:
| Q |
166 |
catcaagttctcaatcaaaattgtgaaatgcaaa-tttgaaaaaggaataaccagaaagaattatactatatcagcataaaaaacagaattgaatgagat |
264 |
Q |
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| T |
33422501 |
catcaagttctcaatcaaaattgtgaaatgcaaaatttgaaaaaggaataaccagaaagaataatactatatcagcataaaaaacagaattgaatgagat |
33422600 |
T |
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| Q |
265 |
gatggttgactgagactgagagacacatggctacaggactacaagtgggccaaaaccatattcaaagccattatctaaaccgacaaaagacaagtgacaa |
364 |
Q |
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| T |
33422601 |
gatggttgactgagactgagagacacatggctacaggactacaagtgggccaaaaccatattcaaagccattatctaaaccgacaaaagacaagtgacaa |
33422700 |
T |
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| Q |
365 |
tgctttcatgagtagtaattaaatctttacactttgtgacaagtgatttgcagattaggtaattaacctttacactttgtgaattcatctcactc |
459 |
Q |
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| T |
33422701 |
tgctttcatgagtagtaattaaatctttacactttgtgacaagtgatttgcagattaggtaattaacctttacactttgtgaattcatttcactc |
33422795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 33422354 - 33422448
Alignment:
| Q |
19 |
gagggaaattctttttcaaggactaacagtcatagatgaaacaaagacaaatggaaaagagcagattagccaaagagttaatattttgatggttg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33422354 |
gagggaaattctttttcaaggactaacagtcatagatgaaacaaagacaaatggacaagagcagattagccaaagagttaatattttgatggttg |
33422448 |
T |
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