View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_low_27 (Length: 457)

Name: NF18678_low_27
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_low_27
NF18678_low_27
[»] chr8 (3 HSPs)
chr8 (19-444)||(7594700-7595118)
chr8 (33-63)||(27989094-27989124)
chr8 (33-63)||(28046396-28046426)
[»] scaffold0687 (1 HSPs)
scaffold0687 (19-444)||(4048-4463)
[»] chr4 (3 HSPs)
chr4 (19-54)||(22038614-22038649)
chr4 (19-63)||(36161980-36162024)
chr4 (19-63)||(37465742-37465786)
[»] scaffold0603 (1 HSPs)
scaffold0603 (21-63)||(7967-8009)
[»] chr7 (3 HSPs)
chr7 (25-63)||(34899414-34899452)
chr7 (25-74)||(39171386-39171435)
chr7 (19-63)||(11654051-11654095)
[»] chr6 (2 HSPs)
chr6 (25-59)||(17346334-17346368)
chr6 (19-64)||(679358-679403)
[»] chr5 (1 HSPs)
chr5 (25-63)||(8514450-8514488)
[»] chr2 (2 HSPs)
chr2 (19-63)||(14416414-14416458)
chr2 (23-63)||(27865172-27865212)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 7595118 - 7594700
Alignment:
Q  19 atgttattgtatttgatgtactctatcaatttaaataaataaataaatattgttttcctttatnnnnnnnncaagaataaatcttttgaatggaagtcat 118  Q
    |||| |||||||||||||||| |||||||||||||||||||||||    |||||||||||||         |||||| ||||||||||||||||||||||    
T  7595118 atgtcattgtatttgatgtacactatcaatttaaataaataaata----ttgttttccttta--aaaaaaacaagaagaaatcttttgaatggaagtcat 7595025  T
Q  119 aatattgattcatgaatggaagtgtggttgctcattttctaacacgggagccacatatacacctcgaccttagtattatcattgcagttcaacgtaaatt 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7595024 aatattgattcatgaatgaaagtgtggttgctcattttctaacacggaagccacatatacacctcgaccttagtattatcactgcagttcaacgtaaatt 7594925  T
Q  219 tgaaccttttaatattgaggaaatgaggtggatttctcttagatatgatagaaaagttaccaagtgaaagttgtatttcaagtgattgcgcatattattc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  7594924 tgaaccttttaatattgaggaaatgaggtggatttctcttagatatgatagaaaagttatcaagtgaaagttgtatttcaagtgattgcgcatattattt 7594825  T
Q  319 ttttggtgttaacctagaggaagaagatcttagtaatttagaatttgtctgttaggtaagtataatctaacaaaaatttgttcaatttaaaaattaaact 418  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  7594824 ttttggtgttaatctagaggaagaagatcttagtaatttagagtttgtccgttagataagtataatctgacaaaaatttgttcaatttaaaaattgaact 7594725  T
Q  419 caagattcttttatacgatttgtcct 444  Q
    | ||||||||||| ||||||||||||    
T  7594724 c-agattcttttaaacgatttgtcct 7594700  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 27989094 - 27989124
Alignment:
Q  33 gatgtactctatcaatttaaataaataaata 63  Q
    |||||||||||||||||||||||||||||||    
T  27989094 gatgtactctatcaatttaaataaataaata 27989124  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 28046396 - 28046426
Alignment:
Q  33 gatgtactctatcaatttaaataaataaata 63  Q
    |||||||||||||||||||||||||||||||    
T  28046396 gatgtactctatcaatttaaataaataaata 28046426  T

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Target: scaffold0687 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 4463 - 4048
Alignment:
Q  19 atgttattgtatttgatgtactctatcaatttaaataaataaataaatattgttttcctttatnnnnnnnncaagaataaatcttttgaatggaagtcat 118  Q
    |||| |||||||||||||||| |||||||||||||||||||||||    |||||||||||||           |||| || |||||||||||||||||||    
T  4463 atgtcattgtatttgatgtacactatcaatttaaataaataaata----ttgttttcctttaaaaaaac----agaagaa-tcttttgaatggaagtcat 4373  T
Q  119 aatattgattcatgaatggaagtgtggttgctcattttctaacacgggagccacatatacacctcgaccttagtattatcattgcagttcaacgtaaatt 218  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4372 aatattgattcatgaatgaaagtgtggttgctcattttctaacacggaagccacatatacacctcgaccttagtattatcactgcagttcaacgtaaatt 4273  T
Q  219 tgaaccttttaatattgaggaaatgaggtggatttctcttagatatgatagaaaagttaccaagtgaaagttgtatttcaagtgattgcgcata-ttatt 317  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  4272 tgaaccttttaa-attgaggaaatgaggtggatttctcttagatatgatagaaaagttatcaagtgaaagttgtatttcaagtgattgcgcatatttatt 4174  T
Q  318 cttttggtgttaacctagaggaagaagatcttagtaatttagaatttgtctgttaggtaagtataatctaacaaaaatttgttcaatttaaaaattaaac 417  Q
     |||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| |||||||||||| |||||||||||||||||||||||||| |||    
T  4173 tttttggtgttaatctagaggaagaagatcttagtaatttagagtttgtccgttagataagtataatctgacaaaaatttgttcaatttaaaaattgaac 4074  T
Q  418 tcaagattcttttatacgatttgtcct 444  Q
    || ||||||||||| ||||||||||||    
T  4073 tc-agattcttttaaacgatttgtcct 4048  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 22038649 - 22038614
Alignment:
Q  19 atgttattgtatttgatgtactctatcaatttaaat 54  Q
    |||||||||||||||||||| |||||||||||||||    
T  22038649 atgttattgtatttgatgtattctatcaatttaaat 22038614  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 36161980 - 36162024
Alignment:
Q  19 atgttattgtatttgatgtactctatcaatttaaataaataaata 63  Q
    |||||||||||||||||||| ||||||||||| ||| ||| ||||    
T  36161980 atgttattgtatttgatgtattctatcaatttgaatgaatgaata 36162024  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 37465742 - 37465786
Alignment:
Q  19 atgttattgtatttgatgtactctatcaatttaaataaataaata 63  Q
    |||||||||||| ||||||| ||||||||||||||| ||| ||||    
T  37465742 atgttattgtatctgatgtattctatcaatttaaatgaatgaata 37465786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 7967 - 8009
Alignment:
Q  21 gttattgtatttgatgtactctatcaatttaaataaataaata 63  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||    
T  7967 gttattgtatttgatgtactctatcaatttgaatgaatgaata 8009  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 34899452 - 34899414
Alignment:
Q  25 ttgtatttgatgtactctatcaatttaaataaataaata 63  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  34899452 ttgtatttgatgtactctatcaatttgaatgaataaata 34899414  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 39171435 - 39171386
Alignment:
Q  25 ttgtatttgatgtactctatcaatttaaataaataaataaatattgtttt 74  Q
    |||||| |||||||||||||| |||| ||| ||||||||||||| |||||    
T  39171435 ttgtatctgatgtactctatcgatttgaatgaataaataaatatcgtttt 39171386  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 11654051 - 11654095
Alignment:
Q  19 atgttattgtatttgatgtactctatcaatttaaataaataaata 63  Q
    |||||||||||||||||||| ||||||||||| ||| ||| ||||    
T  11654051 atgttattgtatttgatgtattctatcaatttgaatgaatgaata 11654095  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 17346368 - 17346334
Alignment:
Q  25 ttgtatttgatgtactctatcaatttaaataaata 59  Q
    |||||||||||||||||||||||||||||| ||||    
T  17346368 ttgtatttgatgtactctatcaatttaaatgaata 17346334  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 679358 - 679403
Alignment:
Q  19 atgttattgtatttgatgtactctatcaatttaaataaataaataa 64  Q
    |||||||||||| ||||||| ||||||||||| ||| |||||||||    
T  679358 atgttattgtatctgatgtattctatcaatttgaatgaataaataa 679403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 8514488 - 8514450
Alignment:
Q  25 ttgtatttgatgtactctatcaatttaaataaataaata 63  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  8514488 ttgtatttgatatactctatcgatttaaataaataaata 8514450  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 14416414 - 14416458
Alignment:
Q  19 atgttattgtatttgatgtactctatcaatttaaataaataaata 63  Q
    |||||||||||| ||||||| ||||||||||| ||| ||||||||    
T  14416414 atgttattgtatctgatgtattctatcaatttgaatgaataaata 14416458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 27865172 - 27865212
Alignment:
Q  23 tattgtatttgatgtactctatcaatttaaataaataaata 63  Q
    |||||||| | ||||||||| ||||||||||||||||||||    
T  27865172 tattgtatctaatgtactctttcaatttaaataaataaata 27865212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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