View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_28 (Length: 456)
Name: NF18678_low_28
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 14340675 - 14340243
Alignment:
| Q |
19 |
ttatcgactcaacccatgattgaaccagatgacatgcaagtgttgnnnnnnnnnnnnnn-taatgaaaatcaattaaaccaataccggttccacttggtt |
117 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14340675 |
ttatcgactcaacc-atgattgaaccagatgacatgcaagtgttgaaaaaggaaaaaaaataatgaaaatcaattaaaccaataccggttccacttggtt |
14340577 |
T |
|
| Q |
118 |
caatcatactacaatataactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaatttctttggttgctaattattacctgcac |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
14340576 |
caatcatactacaatataactggaatcaaaccaatcgccaaacttgataataatgcatcaacgaggcttaatttctttggttgctaattatcacctgcac |
14340477 |
T |
|
| Q |
218 |
tgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatatcattttgtcca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
14340476 |
tgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccatagctaatatcattttgtcca |
14340377 |
T |
|
| Q |
318 |
atatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccctataaataacatcacatatataggtt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14340376 |
atatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccctataaataacatcacatatataggtt |
14340277 |
T |
|
| Q |
418 |
cagtttttcaccattcacttctttttcatctcac |
451 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |
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| T |
14340276 |
cagtttttcaccattcacttctttttcatgtcac |
14340243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 78 - 451
Target Start/End: Complemental strand, 3601742 - 3601373
Alignment:
| Q |
78 |
taatgaaaatcaattaaaccaataccggttccacttggttcaatcatactacaatataactggaatcaaaccaattgccaaacttgataataatgcatca |
177 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3601742 |
taatgaaaatcaattaaaccaataccggttcaacttggttcaatcatactacaatgtaactggaatcaaaccaattgccaaacttgataataatgcatca |
3601643 |
T |
|
| Q |
178 |
acaaggcttaatttctttggttgctaattattacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaaga |
277 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3601642 |
acaaggcttaatttctttggttgctaattattacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttctaacttcttcctctgaaga |
3601543 |
T |
|
| Q |
278 |
gttcggcttctgcagaccataaccaatatcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgaga |
377 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
3601542 |
gttcggcttctgcagaccatagccaatatcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcagtccttggaacgccacttctgaga |
3601443 |
T |
|
| Q |
378 |
ggtggttctgtccctataaataacatcacatatataggttcagtttttcaccattcacttctttttcatctcac |
451 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
3601442 |
ggtggttctgtccctataaatgacatcac----ataggttcagtttttcaccattcacttctttttcatgtcac |
3601373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 90 - 361
Target Start/End: Complemental strand, 3568732 - 3568467
Alignment:
| Q |
90 |
attaaaccaataccggttccacttggttcaatcatactacaatataactggaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaat |
189 |
Q |
| |
|
|||||||||||| |||| ||||||| |||||||||| |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3568732 |
attaaaccaatagatgttcaacttggtgcaatcatactgcaatgtaaccgtaatcaaaccaattgccaaacttgataataatgcatcaacaaggcttaat |
3568633 |
T |
|
| Q |
190 |
ttctttggttgctaattattacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctg |
289 |
Q |
| |
|
||||||||| | | | ||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||| |||||||||||| |||||| |
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| T |
3568632 |
ttctttggtggttgctaattacctgcactgcttgggagaattggctcaagatgtcaggaattgaccttctaacttgttcctctgaaga------cttctg |
3568539 |
T |
|
| Q |
290 |
cagaccataaccaatatcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttgg |
361 |
Q |
| |
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||||||| | ||||||||||||||| |||||||||| ||||||||||| || |||||||||| | ||||||| |
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| T |
3568538 |
cagaccaaagccaatatcattttgtgcaatatcaattgtgtaaatggccttagagaaatctttagtccttgg |
3568467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 3590816 - 3590710
Alignment:
| Q |
79 |
aatgaaaatcaattaaaccaataccggttccacttggttcaatcatactacaatataactggaatcaaaccaattgccaaacttgataataatgcatcaa |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||| |||| |||| |||| ||||||||||||||||||| ||||||||| ||||| |
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|
| T |
3590816 |
aatgaaaatcaattaaaccaataccggttcaacttagttcaatcatactgcaatgtaacaggaaacaaaccaattgccaaacttaataataatgtatcaa |
3590717 |
T |
|
| Q |
179 |
caaggct |
185 |
Q |
| |
|
||||||| |
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|
| T |
3590716 |
caaggct |
3590710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 3590708 - 3590634
Alignment:
| Q |
207 |
attacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttc |
281 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||| ||||| |||| |
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|
| T |
3590708 |
attacctgcactgcttggaagaattggctcaagatatcaggaaatgaccttctaacttgttcctttgaagtgttc |
3590634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 176 - 398
Target Start/End: Complemental strand, 1408906 - 1408690
Alignment:
| Q |
176 |
caacaaggcttaatttctttggttgctaattattacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaa |
275 |
Q |
| |
|
|||||||||||||| |||||||| | || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
1408906 |
caacaaggcttaatatctttggtggttacaaattacctgcactgcttgggagaattggctcaagatatcaggaattgaccttttaacttgttcctctgaa |
1408807 |
T |
|
| Q |
276 |
gagttcggcttctgcagaccataaccaatatcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctga |
375 |
Q |
| |
|
| | ||||| | |||| ||| ||||||||||||||||||||| ||||||| ||| || ||||| || ||| |||||||||| |||||| ||| |
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|
| T |
1408806 |
gtg------ttctgtaaaccaatggcaagatcattttgtccaatatcaattgtgtaaagggccttagagaattcctcattccttggaagaccacttttga |
1408713 |
T |
|
| Q |
376 |
gaggtggttctgtccctataaat |
398 |
Q |
| |
|
||||| |||||||||||||||| |
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|
| T |
1408712 |
aaggtgattctgtccctataaat |
1408690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 392
Target Start/End: Complemental strand, 1416861 - 1416682
Alignment:
| Q |
207 |
attacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatat |
306 |
Q |
| |
|
||||||| ||||| ||||| ||| | |||||| || |||||||||||||||| ||||| ||||||||||| || || | ||||| | ||| || |
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|
| T |
1416861 |
attaccttcactgattgggagaaattgctcaatatttcaggaattgacctttgaacttgttcctctgaagtgtat------tgaaaaccatgagcaagat |
1416768 |
T |
|
| Q |
307 |
cattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
392 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| || |||||||| ||| ||||||||| |||||| |||||| ||||||||||||| |
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|
| T |
1416767 |
cattttgtccaatatcaattgtgtaaagggccttagagaaatcctcaggccttggaagaccacttttgagagatggttctgtccct |
1416682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 207 - 392
Target Start/End: Complemental strand, 1412011 - 1411832
Alignment:
| Q |
207 |
attacctgcactgcttgggtgaattggctcaagatatcaggaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatat |
306 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| || |||||||||||||||| ||||| ||| ||||||| || | | | | |||||| ||| || |
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|
| T |
1412011 |
attaccttcactgcttgggacaattggctcaatatttcaggaattgacctttgaacttgttcttctgaagtgt--gtc----gaaaaccataggcaagat |
1411918 |
T |
|
| Q |
307 |
cattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
392 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| || ||||| || ||| || |||||| |||||| ||||||| ||||| |||||| |
|
|
| T |
1411917 |
cattttgtccaatatcaattgtgtaaagggccttagagaagtcctcaggccctggaagaccacttttgagaggcggttccgtccct |
1411832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 150
Target Start/End: Complemental strand, 1409118 - 1409071
Alignment:
| Q |
103 |
cggttccacttggttcaatcatactacaatataactggaatcaaacca |
150 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
1409118 |
cggttcaacttggttcaatcatactgcaatataatcggaatcaaacca |
1409071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 392
Target Start/End: Complemental strand, 1421228 - 1421141
Alignment:
| Q |
305 |
atcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
392 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||| | |||| || ||| ||||||||| |||||| |||||| ||||||||||||| |
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|
| T |
1421228 |
atcatttagtccaatatcaattgtgtaaagggccgtacagaagtcctcaggccttggaagaccacttttgagagatggttctgtccct |
1421141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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