View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_29 (Length: 454)
Name: NF18678_low_29
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 194 - 438
Target Start/End: Original strand, 6476004 - 6476248
Alignment:
| Q |
194 |
gatccaaacgcaatgctaagagatgaaatcattggttccaaaagcgcaaggcacagcaccaccgccgctgtatcttcgaataaggttcttgtggcggtta |
293 |
Q |
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| T |
6476004 |
gatccaaacgcaatgctaagagatgaaatcattggttccaaaagcgcaaggcacagcaccaccgccgctgtatcttcgaataaggttctcgtggcggtta |
6476103 |
T |
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| Q |
294 |
aagcggagaaggtgatctcaaacaccgcattagcatgggcgcttactaacatcgttcattcgagcgactcaatcactcttctcgctgtttattctactga |
393 |
Q |
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| T |
6476104 |
aagcggagaaggtgatctcaaacaccgcattagcatgggcgcttactaacatcgttcattcaagcgactcaatcactcttctcgctgtttattctactga |
6476203 |
T |
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| Q |
394 |
aaaaactggtatataattttaatcctgtttaattcaattctgttt |
438 |
Q |
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| T |
6476204 |
aaaaactggtatataattttaatcctattttattcaattctgttt |
6476248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 2 - 170
Target Start/End: Original strand, 6475819 - 6475986
Alignment:
| Q |
2 |
caaacaactaacacgactagtagtaagtaagtaactatagttaagttaactaaccattgattacaaaatgccagttgtagaaaacatggagcattcattc |
101 |
Q |
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| T |
6475819 |
caaacaactaacaagactagtagtaagtaagtaactatagttaagttaactaaccat-gattacaaaatgccagttgtagaaaacatggagcattcattc |
6475917 |
T |
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| Q |
102 |
aatctaccgcaaaataatgcaatacaaacgtaacatcaaaacccaaaaccaaaaccgaaattcacattt |
170 |
Q |
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| T |
6475918 |
aatctaccgcaaaataatgcaatacaaacgtaacatcaaaacccaaaaccaaaaccgaaattcacattt |
6475986 |
T |
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