View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_3 (Length: 715)
Name: NF18678_low_3
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 126 - 702
Target Start/End: Complemental strand, 43170799 - 43170224
Alignment:
| Q |
126 |
gcaagtcttaaatcaaaacatgatcaaacataaaacgtggtaaatttgtagggacgaaaagtaaaacaaatatttttagagacttaaacaaaaagttgta |
225 |
Q |
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| T |
43170799 |
gcaagtcttaaatcaaaacatgatcaaacataaaacgtggtaaatttgtagggacgaaaagtaaaacaaatatttttagagacttaaacaaaatgttgta |
43170700 |
T |
|
| Q |
226 |
tatttgaagtactacatacaaatttctttattttaatttcaattttgcatgttttttgatgtct--gtgaaaatgattttgcagagttgtgagataactt |
323 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
43170699 |
tatttgaagtactacatacaaattt-tttattttaatttcaattttgcatgttttttgatgtgtttgtgaaaatgattttgcagagttgtgagataactt |
43170601 |
T |
|
| Q |
324 |
tgaatgccacagatatcttggaatgtttccccttgaatttattagactggggtagaactggtgtcctttccatagcactcaatgatacagttgttctttg |
423 |
Q |
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| T |
43170600 |
tgaatgccacagatatcttggaatgtttccccttgaatttattagattggggtagaactggtgtcctttccatagcactcaatgatatagttgttctttg |
43170501 |
T |
|
| Q |
424 |
tagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctgggagccagatggacacatttaa |
523 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
43170500 |
tagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctggcagccagatggacacatttta |
43170401 |
T |
|
| Q |
524 |
gccattggtttcatgaattccattgtccagctctgggatacatctactatgacacgggtaaatgctgctcgtgttctttgtattgtttttaaacttgaaa |
623 |
Q |
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| T |
43170400 |
gccattggtttgatgaattccattgtccagctctgggatacatctactatgacacgggtaaa--ctgcttgtgttctttgtattgtttttaaacttgaaa |
43170303 |
T |
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| Q |
624 |
ttgttctctactctcatgtttgtgtggttttattttggtcactgctgcagattagtacatggagtgtcggacacaggtt |
702 |
Q |
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| T |
43170302 |
tttttctctattctcatgtttgtgtggttttattttggtcactgctgcagattagtacatggagtgtcggacacaggtt |
43170224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 126 - 699
Target Start/End: Original strand, 43217537 - 43218109
Alignment:
| Q |
126 |
gcaagtcttaaatcaaaacatgatcaaacataaaacgtggtaaatttgtagggacgaaaagtaaaacaaatatttttagagacttaaacaaaaagttgta |
225 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43217537 |
gcaagtcttaaatcaaaacatgatcaaacataaaacatggtaaatttgtaaggacgaaaagtaaaacaaatatttttagagacttaaacaaaaagttgtg |
43217636 |
T |
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| Q |
226 |
tatttgaagtactacatacaaatttctttattttaatttcaattttgcatgttttttgatgtct--gtgaaaatgattttgcagagttgtgagataactt |
323 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
43217637 |
tatttgaagtactacatacaaattt-tttattttaatttcaattttgcatgttttttgatgtgtttgtgaaaatgattttgcagagttgtgagataactt |
43217735 |
T |
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| Q |
324 |
tgaatgccacagatatcttggaatgtttccccttgaatttattagactggggtagaactggtgtcctttccatagcactcaatgatacagttgttctttg |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43217736 |
tgaatgccacagatatcttggaatgtttccccttgaatttattagattggggtagaactggtgtcctttccatagcactcaatgatattgttgttctttg |
43217835 |
T |
|
| Q |
424 |
tagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctgggagccagatggacacatttaa |
523 |
Q |
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| T |
43217836 |
tagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctggcagccagatggacacatttta |
43217935 |
T |
|
| Q |
524 |
gccattggtttcatgaattccattgtccagctctgggatacatctactatgacacgggtaaatgctgctcgtgttctttgtattgtttttaaacttgaaa |
623 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
43217936 |
gccattggtttgatgaattccattgtccagctctgggatacatctactatgacacgggtaaa--ctgcttgtgttctttgtattgtttttaaacttgaaa |
43218033 |
T |
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| Q |
624 |
ttgttctctactctcatgtttgtgtggttttattttggtcactgctgcagattagtacatggagtgtcggacacag |
699 |
Q |
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| T |
43218034 |
ttgttctctattctcatgtttgtgtggttttattttggtcactgctgcagattagtacatggagtgtcggacacag |
43218109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 43170906 - 43170848
Alignment:
| Q |
19 |
aaggagagcattcagaacccatgatagagtttggttggtaatgtagtcatcatccaatc |
77 |
Q |
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| T |
43170906 |
aaggagagcattcagaacccatgatagagtttggttggtaatgtagtcatcatccaatc |
43170848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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