View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_30 (Length: 452)
Name: NF18678_low_30
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 87 - 336
Target Start/End: Original strand, 20124470 - 20124720
Alignment:
| Q |
87 |
aatgaattgtagagaatcatattaaagaactttacaaccagaaaagttatttattaaattaacatcgttttgaactttgtgtgaccagtacaatccatcc |
186 |
Q |
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| T |
20124470 |
aatgaattgtagagaatcatattaaagaactttacaaccagaaaagttatttattaaattaacatcgttttgaactttgtgtgaccagtacaatccatcc |
20124569 |
T |
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| Q |
187 |
ataacctcacttaaaaactagctacaaaggagtattcaatctggtgaattttatgcttatatagaactcatttatacataagaaatgcataattcccc-t |
285 |
Q |
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| T |
20124570 |
ataacctcacttaaaaactagctacaaaggagtattcaatctggtgaattttatgcttatatagaactcatttatacataagaaatgcataattccccat |
20124669 |
T |
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| Q |
286 |
tggatccataaataatctgcacccaataaatcctttcgatgcatatttata |
336 |
Q |
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| T |
20124670 |
tggatccataaataatctgcacccaataaatcctttcgatgcatatttata |
20124720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 20124372 - 20124443
Alignment:
| Q |
16 |
aaatatttcacattgaaatcggttttaactaaaactaattttatctaatctatttaacatactacataagaa |
87 |
Q |
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| T |
20124372 |
aaatattttacattgaactcggttttaactaaaactaattttgtctaatctatttaacatactacataagaa |
20124443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 20124821 - 20124868
Alignment:
| Q |
375 |
gtatgatttattcctacggttttactttctccaatcactgttataaac |
422 |
Q |
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| T |
20124821 |
gtatgatttatttctacggttttactttctccgatcactgttataaac |
20124868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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