View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_33 (Length: 422)
Name: NF18678_low_33
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 9562970 - 9563370
Alignment:
| Q |
1 |
ttattttttagttatagtataacagtaaagaaatgcatatctaagaaaaaagttcatcgtatttagtcaaaaatataaaagttcatggtata--tatcaa |
98 |
Q |
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| T |
9562970 |
ttattttttagttatagtataacagtaaagaaatgcatatctaagaaaaaagttcatcgtatttagtcaaaaatataaaagttcatggtatatatatcaa |
9563069 |
T |
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| Q |
99 |
ttatcctgttaatatatgataattacagtatgacactgagttggcccagcatgctacaaggatattccctatgtatatatttttataaatgaataaataa |
198 |
Q |
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| T |
9563070 |
ttatccagttaatatatgataatcacagtatgacactgagttggcccagcatgctacaaggatattccctatgtatatatttttataaatgaataaataa |
9563169 |
T |
|
| Q |
199 |
attggaatgttctagaatgagtaaaataatctttgttccataagtnnnnnnnnnctgatatttgagatattggagtgcatgtttaaatcaacaatttctc |
298 |
Q |
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| T |
9563170 |
ataggaatgttctagaaagagtcaaataatctttgttccataagtaaaaaaaaactgatatttgagatattggagtgcatgtttaaatcaacaatttctc |
9563269 |
T |
|
| Q |
299 |
atatttgagcatttggtgttgtgaaatccataagtacgatgagtttgatacatcaagctttacaaaatcatgtaagtaagatgtggattaccaaacattt |
398 |
Q |
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| T |
9563270 |
atatttgagcatttggtgctgtgaaatccataagtatgatgagtttgatacatcaacctttacaaaatcatgttagtaagatgtggattaccaaacattt |
9563369 |
T |
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| Q |
399 |
a |
399 |
Q |
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| T |
9563370 |
a |
9563370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 9571189 - 9571439
Alignment:
| Q |
5 |
tttttagttatagtataacagtaaagaaatgcatatct--aagaaaaaagttcatcgtatttagtcaaaaatataaaagttca-----------tggtat |
91 |
Q |
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| T |
9571189 |
tttttagttatagtataacagtaaagaaatgcatatcttaaaaaaaaaagttcatggtatttagtcaaaaaaataaaagttcacctaacattcatggtat |
9571288 |
T |
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| Q |
92 |
atatcaattatcctgttaatatatgataattacagt---atgacactgagttggcccagcatgctacaaggatattccctatgtatatatttttataaat |
188 |
Q |
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| T |
9571289 |
atatcaattatcctgttaatatatgataattacagtatgatgacactgagtgtgccctgcatgccacaaggatattctctgtgtatatatttttata--- |
9571385 |
T |
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| Q |
189 |
gaataaataaattggaatgttctagaatgagtaaaataatctttgttccataagt |
243 |
Q |
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| T |
9571386 |
-tataaataaaatggaatgttctagaaagtgtaaaataatatttgttccataagt |
9571439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 9571483 - 9571533
Alignment:
| Q |
279 |
gtttaaatcaacaatttctcatatttgagcatttggtgttgtgaaatccat |
329 |
Q |
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| T |
9571483 |
gtttaaataaaaaatttctcatatttgagcatttggtgttgtgaaatccat |
9571533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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