View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_34 (Length: 422)
Name: NF18678_low_34
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 22366249 - 22365873
Alignment:
| Q |
18 |
aagaagaagatgaagagacagaagcataagcagcttctatgaacgccatttcttcttcgctaacaatttcaattggaatattatta---ttgttgaatga |
114 |
Q |
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| T |
22366249 |
aagaagaagatgaagagacagaagcataagctgcttctatgaacgccatttcttcttcgctaacaatttcaattggaatattattaacgttgttggatga |
22366150 |
T |
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| Q |
115 |
ggatgtttcggccatgtttgtgttctttcctttgaccaaa-caaaaaacacaatccttgttctaagtgaaaaatgaccgttgaaaatgccgtgtattttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||| |||||||||||||||||||| ||||||||||| |
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| T |
22366149 |
ggatgtttcggccatgtttgtgttctttcctttgaccaaaacaaaaaatacaatc-ttgttg-aagtaaaaaatgaccgttgaaaatggcgtgtattttt |
22366052 |
T |
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| Q |
214 |
gggtttcaaattgattgttattcacttcaccgcacggaagggacactcaatgcttcaacctttttccttattcaagtaaaaagtagaaagaaccaagctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| |
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| T |
22366051 |
gggtttcaaattgattgttattcacttcaccgcacggaagggacactcaatgcttcaacctttttctttgttcaagtaaaaagaagaaagaaccaagctt |
22365952 |
T |
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| Q |
314 |
ctcctataaacaatcaaacatggccacgagttattgattttttacagggttaaacatgcttttcatc-ctataaatata |
391 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |
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| T |
22365951 |
ctcctgtaaacaatcaaacatggccacgagttattgattttttagagggttaaatatgcttttcatctctataaatata |
22365873 |
T |
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