View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_38 (Length: 395)
Name: NF18678_low_38
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 12037395 - 12037104
Alignment:
| Q |
10 |
ataatactgtattcaaaaactgatggattagtgctctggtaattaggagaatggaagaagaagatactactacttcatattgtgcttttccattatctgg |
109 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12037395 |
ataatactatattcaaaaactgatggattggtgctctggtaattaggagaatggaagaagaagatactactacttcatattgtgcttttccattatctgg |
12037296 |
T |
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| Q |
110 |
atttaatcaataaactataaaaatagattagattaaattg-----tgatttattagttgttaattgatgatgatattgataatccaacaacaaagcgtga |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12037295 |
atttaatcaataaactataaaaatagattagattaaattaaattatgatttattagttgttaattgatgatgatattgataatccaacaacaaagcgtga |
12037196 |
T |
|
| Q |
205 |
tcagtgatttcaactacttgcttgctggccatctaattttaaattagttttgattgccgcgtaacgtctgtaactcttagtctagtaccatt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12037195 |
tcagtgatttcaactacttgcttgctggccatctaattttaaattagttttgattgccgcgtaacgtgggtaactcttagtctagtaccatt |
12037104 |
T |
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