View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_low_39 (Length: 393)

Name: NF18678_low_39
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_low_39
NF18678_low_39
[»] chr7 (4 HSPs)
chr7 (11-315)||(3929921-3930225)
chr7 (11-311)||(3928573-3928873)
chr7 (44-306)||(21317471-21317733)
chr7 (316-368)||(3929780-3929832)
[»] chr2 (5 HSPs)
chr2 (17-305)||(13576218-13576506)
chr2 (53-276)||(34571445-34571668)
chr2 (167-276)||(34562651-34562760)
chr2 (53-276)||(34578913-34579136)
chr2 (53-276)||(34584662-34584885)
[»] chr8 (8 HSPs)
chr8 (11-304)||(43479645-43479938)
chr8 (47-304)||(38799395-38799652)
chr8 (47-304)||(38821865-38822122)
chr8 (47-276)||(25865600-25865829)
chr8 (23-276)||(26592044-26592297)
chr8 (89-277)||(41943886-41944074)
chr8 (197-304)||(38807046-38807153)
chr8 (169-270)||(44343977-44344078)
[»] scaffold0197 (1 HSPs)
scaffold0197 (44-306)||(30909-31170)
[»] chr5 (8 HSPs)
chr5 (11-305)||(12531356-12531650)
chr5 (11-305)||(12546969-12547263)
chr5 (123-305)||(9866627-9866809)
chr5 (113-305)||(9894610-9894800)
chr5 (170-268)||(9870004-9870102)
chr5 (158-255)||(38735528-38735625)
chr5 (226-305)||(9903568-9903647)
chr5 (224-273)||(12538675-12538724)
[»] chr4 (6 HSPs)
chr4 (17-303)||(24860416-24860702)
chr4 (47-267)||(34748655-34748875)
chr4 (160-243)||(53290749-53290832)
chr4 (107-147)||(44771097-44771137)
chr4 (53-132)||(40035830-40035909)
chr4 (173-264)||(40036062-40036153)
[»] chr1 (3 HSPs)
chr1 (166-276)||(7594130-7594240)
chr1 (95-204)||(17769233-17769342)
chr1 (95-204)||(1539185-1539294)
[»] chr3 (1 HSPs)
chr3 (96-204)||(27440846-27440954)


Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 3930225 - 3929921
Alignment:
Q  11 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 110  Q
    ||||||||||||||||||||||||||| | || || ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3930225 cacagattccgtccaggaacagtcgcacttcgtgagatccgcaagtatcagaagagcactgaacttctcattaggaaacttccattccaaagattggttc 3930126  T
Q  111 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttga 210  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3930125 gtgaaatcgctcaggatttcaaaactgatcttcgatttcagagtagtgctgtttctgctcttcaagaagctgctgaagcgtatcttgttggtttgtttga 3930026  T
Q  211 ggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttagaagatt 310  Q
     ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3930025 agatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattcaacttgcaagaagaatcagaggcgaaagggcttagaagatt 3929926  T
Q  311 tgatt 315  Q
    |||||    
T  3929925 tgatt 3929921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 3928873 - 3928573
Alignment:
Q  11 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 110  Q
    ||||||||| | |||||||||||||||||||| |||||| | |||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  3928873 cacagattcagaccaggaacagtcgcattgcgtgaaatcaggaagtatcaaaagatcactgagcttctcattaggaaacttcctttcaaaagattggttc 3928774  T
Q  111 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttga 210  Q
     ||||||||||||||||||||||||||||||| |||| ||||  || ||||||||||| |||||||||   |||||||||| | ||||||||||||||||    
T  3928773 atgaaatcgctcaggatttcaaaactgatctccgattccagatcagcgctgtttctgctcttcaagaaatcgctgaagcgtgtattgttggtttgtttga 3928674  T
Q  211 ggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttagaagatt 310  Q
     |||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| | ||||||||  |||| || ||||||||||||    
T  3928673 agatatgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgcatgcagaatcaggtgcgagagagcttagaagatt 3928574  T
Q  311 t 311  Q
    |    
T  3928573 t 3928573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 44 - 306
Target Start/End: Original strand, 21317471 - 21317733
Alignment:
Q  44 gaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctca 143  Q
    |||||||| ||||| |||||||||||||||||||| || || ||||||||||||||| |  | ||||||||||||||||||||||||||||| |||||||    
T  21317471 gaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctca 21317570  T
Q  144 gatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagag 243  Q
    |||| ||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||    
T  21317571 gattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagag 21317670  T
Q  244 agttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttagaa 306  Q
    |||||| |||||||||||||||||||||||||||||||||||  | || ||||||||||||||    
T  21317671 agttactattatgcctaaggatattcaacttgcaagaagaattcgtggtgaaagggcttagaa 21317733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 3929832 - 3929780
Alignment:
Q  316 gaaaaagtgaatcttgaatgttgaattgatctgttaaatctatgatacttaat 368  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  3929832 gaaaaagtgaatcttgaattttgaattgatctgttgaatctatgatacttaat 3929780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 13576218 - 13576506
Alignment:
Q  17 ttccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaa 116  Q
    |||||||| ||||| |||||  | || |||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  13576218 ttccgtcctggaaccgtcgctcttcgtgaaatccgcaagtatcagaagagcaccgagcttctcataaggaagcttccattccaaagattggttcgagaaa 13576317  T
Q  117 tcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatac 216  Q
    | ||||||||||||||||| |||||| | ||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  13576318 ttgctcaggatttcaaaacggatctccgttttcaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatac 13576417  T
Q  217 gaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 305  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13576418 gaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgcgagaagaatcagaggcgaaagggcttaga 13576506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 53 - 276
Target Start/End: Complemental strand, 34571668 - 34571445
Alignment:
Q  53 aagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcaga 152  Q
    |||||||||||||| || || ||| | ||  | ||||||||||||||  |  | ||||||||||| |||||||||||||| || ||| |  |||| ||||    
T  34571668 aagtatcagaagagtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcaggatttcaagacggatttacgattccaga 34571569  T
Q  153 gtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccat 252  Q
    |   ||| |||   |||||||| ||||| || ||||| ||| | |||||||||||||||||||| ||| | ||||| |||||||||||||| ||||||||    
T  34571568 gccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccat 34571469  T
Q  253 tatgcctaaggatattcaacttgc 276  Q
    ||||||||||||||||||||||||    
T  34571468 tatgcctaaggatattcaacttgc 34571445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 167 - 276
Target Start/End: Complemental strand, 34562760 - 34562651
Alignment:
Q  167 gcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggata 266  Q
    |||||||| ||||| || ||||| ||| | |||||||||||||||||||| ||| | ||||| |||||||||||||| ||||||||||||||||||||||    
T  34562760 gcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggata 34562661  T
Q  267 ttcaacttgc 276  Q
    ||||||||||    
T  34562660 ttcaacttgc 34562651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 276
Target Start/End: Complemental strand, 34579136 - 34578913
Alignment:
Q  53 aagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcaga 152  Q
    |||||||||||| | || || ||| | ||| | ||||||||||||||  |  | ||||||||||| |||||| ||||||| || ||| | ||||| ||||    
T  34579136 aagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccaga 34579037  T
Q  153 gtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccat 252  Q
    |   ||| |||   |||||||| ||||| |  ||||| ||| | |||||||||||||||||||| ||| | ||||| ||||||||||||||  | ||| |    
T  34579036 gccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgt 34578937  T
Q  253 tatgcctaaggatattcaacttgc 276  Q
    ||||   |||||||||||||||||    
T  34578936 tatggtgaaggatattcaacttgc 34578913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 53 - 276
Target Start/End: Complemental strand, 34584885 - 34584662
Alignment:
Q  53 aagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcaga 152  Q
    |||||||||||| | || || ||| | ||| | ||||||||||||||  |  | ||||||||||| |||||| ||||||| || ||| | ||||| ||||    
T  34584885 aagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccaga 34584786  T
Q  153 gtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccat 252  Q
    |   ||| |||   |||||||| ||||| |  ||||| ||| | |||||||||||||||||||| ||| | ||||| ||||||||||||||  | ||| |    
T  34584785 gccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgt 34584686  T
Q  253 tatgcctaaggatattcaacttgc 276  Q
    ||||   |||||||||||||||||    
T  34584685 tatggtgaaggatattcaacttgc 34584662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 7e-96; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 43479938 - 43479645
Alignment:
Q  11 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 110  Q
    |||||||||||||| ||||| || ||  | || || ||||| |||||||||||||| || ||||||||||| ||||| |||||||||||||||||||||     
T  43479938 cacagattccgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttccattccaaagattggtta 43479839  T
Q  111 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttga 210  Q
    | |||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  43479838 gggaaatcgctcaggatttcaaaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagcttatcttgttggtttgtttga 43479739  T
Q  211 ggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttag 304  Q
     ||||| || ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  43479738 agatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattcaacttgcaagaagaattagaggcgagagggcttag 43479645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 47 - 304
Target Start/End: Original strand, 38799395 - 38799652
Alignment:
Q  47 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagat 146  Q
    ||||| |||||||||||||||||||||||||||||  | ||||||||||||||| |  | ||||||||||| ||||| |||||||| || ||||| ||||    
T  38799395 atccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagat 38799494  T
Q  147 ttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagt 246  Q
    | ||||| || || ||||| || |||||||||||||||||||| ||  | |||||| | ||||| || || || |||||||| |||||||||||||||||    
T  38799495 tccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagt 38799594  T
Q  247 taccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttag 304  Q
    ||| || ||||||||||| ||||| |||||||||||||||||||| || |||||||||    
T  38799595 tacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttag 38799652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 47 - 304
Target Start/End: Complemental strand, 38822122 - 38821865
Alignment:
Q  47 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagat 146  Q
    ||||| |||||||||||||||||||||||||||||  | ||||||||||||||| |  | ||||||||||| ||||| |||||||| || ||||| ||||    
T  38822122 atccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctgagat 38822023  T
Q  147 ttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagt 246  Q
    | ||||| || || ||||| || |||||||||||||||||||| ||  | |||||| | ||||| || || || |||||||| |||||||||||||||||    
T  38822022 tccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagt 38821923  T
Q  247 taccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttag 304  Q
    ||| || ||||||||||| ||||| |||||||||||||||||||| || |||||||||    
T  38821922 tacaatcatgcctaaggacattcagcttgcaagaagaatcagaggagagagggcttag 38821865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 47 - 276
Target Start/End: Original strand, 25865600 - 25865829
Alignment:
Q  47 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagat 146  Q
    ||||| |||||||||||||| ||||||||| | ||  | || |||||||||||  |  | ||||||||||| ||||||||||||||||| ||||| ||||    
T  25865600 atccgtaagtatcagaagagtactgagcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattgctcaggatttcaaaacggatctgagat 25865699  T
Q  147 ttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagt 246  Q
    ||||||||  |||||||  ||||||||| ||||||||||| || |||||||| || |||||||||||||| ||| | ||||| |||||||||||||| ||    
T  25865700 ttcagagtcatgctgttcttgcacttcaggaagctgctgaggcttatcttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaagagggt 25865799  T
Q  247 taccattatgcctaaggatattcaacttgc 276  Q
     || |||||||| ||||||||||| |||||    
T  25865800 aacgattatgccaaaggatattcagcttgc 25865829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 276
Target Start/End: Original strand, 26592044 - 26592297
Alignment:
Q  23 ccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctc 122  Q
    |||||||| |||||| | || || ||||| ||||| ||||||||||| || ||||||||| | |||||||| |||||  |  | |||||||| || ||||    
T  26592044 ccaggaaccgtcgcactccgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctc 26592143  T
Q  123 aggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatct 222  Q
    |||||||||| || |||||| | ||||||||   |||||| || || || |||||||| || || || ||||||||||| |||||||||||||| || ||    
T  26592144 aggatttcaagacggatctccgttttcagagctctgctgtgtcggcgctgcaagaagcggcggaggcttatcttgttggattgtttgaggatactaacct 26592243  T
Q  223 ttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgc 276  Q
     || ||||||||||||||| | ||||| || ||||||||||||||||| |||||    
T  26592244 ctgcgctattcatgctaagcgtgttactatcatgcctaaggatattcagcttgc 26592297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 89 - 277
Target Start/End: Original strand, 41943886 - 41944074
Alignment:
Q  89 cttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaag 188  Q
    |||||||||||| |  | ||||||||||| ||||| |||||||| || ||||||||||| |||||   |||||||  ||||||||| ||||| || ||||    
T  41943886 cttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaag 41943985  T
Q  189 cgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgca 277  Q
    | ||||| ||||| |||||||||||||| ||| | ||||| |||||||||||||| ||||| |||||||| ||||| ||||||||||||    
T  41943986 cttatctggttggattgtttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattcaacttgca 41944074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 304
Target Start/End: Original strand, 38807046 - 38807153
Alignment:
Q  197 gttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaa 296  Q
    |||||| | |||||||| || ||||  || || |||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |    
T  38807046 gttggtctctttgaggacacaaatccgtgcgcaattcatgctaagagagttactatcatgcctaaggacattcaacttgcaagaagaatcagaggcgaga 38807145  T
Q  297 gggcttag 304  Q
    ||||||||    
T  38807146 gggcttag 38807153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 169 - 270
Target Start/End: Original strand, 44343977 - 44344078
Alignment:
Q  169 acttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatatt 268  Q
    |||||| ||||| ||||| || ||||| || || |||||||||||||| ||| | |||||||||||||||||||| || || |||||||| |||||||||    
T  44343977 acttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatatt 44344076  T
Q  269 ca 270  Q
    ||    
T  44344077 ca 44344078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 163; Significance: 6e-87; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 44 - 306
Target Start/End: Original strand, 30909 - 31170
Alignment:
Q  44 gaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctca 143  Q
    |||||||| ||||| |||||||||||||||||||| || || ||||||| ||||||| |  | |||||||||||||||||||||||||||||  ||||||    
T  30909 gaaatccgcaagtaccagaagagcactgagcttctgataagaaaacttc-attccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctca 31007  T
Q  144 gatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagag 243  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||    
T  31008 gattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagag 31107  T
Q  244 agttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttagaa 306  Q
    |||||| |||||||||||||||||||||||||||||||||||  | || ||||||||||||||    
T  31108 agttactattatgcctaaggatattcaacttgcaagaagaattcgtggtgaaagggcttagaa 31170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 9e-80; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 11 - 305
Target Start/End: Original strand, 12531356 - 12531650
Alignment:
Q  11 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 110  Q
    |||||||||||||||||||| || ||| | || || ||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||| ||  | ||||    
T  12531356 cacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttc 12531455  T
Q  111 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttga 210  Q
    ||||||||||||| ||||||||||| |||||| |||| || || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  12531456 gtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttga 12531555  T
Q  211 ggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 305  Q
     ||||| ||||| ||||| |||||||||||||| ||||| || |||||||||||||||||||| ||  | |||||||||||||| ||||||||||    
T  12531556 agatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttaga 12531650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 12547263 - 12546969
Alignment:
Q  11 cacagattccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttc 110  Q
    |||||||||||||||||||| || ||| | || || ||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||| ||  | ||||    
T  12547263 cacagattccgtccaggaactgttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttc 12547164  T
Q  111 gtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttga 210  Q
    ||||||||||||| ||||||||||| |||||| |||| || || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  12547163 gtgaaatcgctcaagatttcaaaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttga 12547064  T
Q  211 ggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 305  Q
     ||||| ||||| ||||| |||||||||||||| ||||| || |||||||||||||||||||||||  | ||||| |||||||| || |||||||    
T  12547063 agatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaacttgctcgcagaattagaggcgagagagcttaga 12546969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 123 - 305
Target Start/End: Complemental strand, 9866809 - 9866627
Alignment:
Q  123 aggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatct 222  Q
    |||||||||| |||||||| || ||  ||||||||| ||||||||| ||||||||||||||| |||  |||||||||||||||||||| ||||| || ||    
T  9866809 aggatttcaagactgatctgaggttctagagtagtgatgtttctgctcttcaagaagctgctaaagactatcttgttggtttgtttgaagatactaacct 9866710  T
Q  223 ttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 305  Q
    ||||||||||||||||||||||||||| ||||||||| |||| || ||||| ||   ||||||||||||| | ||||||||||    
T  9866709 ttgtgctattcatgctaagagagttactattatgcctgaggacatccaactcgcttaaagaatcagaggccagagggcttaga 9866627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 113 - 305
Target Start/End: Original strand, 9894610 - 9894800
Alignment:
Q  113 gaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgagg 212  Q
    ||||| |||||||||| ||| |||| ||| || || ||||||||||||||||||||  ||||||||| || |||||| | | ||||| |||||||||| |    
T  9894610 gaaattgctcaggatt-caagactggtctgaggttccagagtagtgctgtttctgctgttcaagaagttgttgaagcttgttttgttagtttgtttgaag 9894708  T
Q  213 atacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 305  Q
    |||| ||| |||| ||||||||||||||| ||||||| |||||| | ||||||||| |||||||  | |||||||||||||| ||||||||||    
T  9894709 atactaatatttgcgctattcatgctaagtgagttactattatggc-aaggatattgaacttgctcgcagaatcagaggcgagagggcttaga 9894800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 170 - 268
Target Start/End: Original strand, 9870004 - 9870102
Alignment:
Q  170 cttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggatatt 268  Q
    ||||||||||||| |||||| ||| |||||||||||||| | ||||  |||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  9870004 cttcaagaagctgttgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcctaaggatatt 9870102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 255
Target Start/End: Original strand, 38735528 - 38735625
Alignment:
Q  158 gctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattat 255  Q
    ||||||||||| |||||| |||    |||||  |||||||||||||||||||| ||||| || |||||| |||||||||||||||| ||||| |||||    
T  38735528 gctgtttctgctcttcaaaaagtcattgaagtttatcttgttggtttgtttgaagatactaacctttgtactattcatgctaagagggttacaattat 38735625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 9903568 - 9903647
Alignment:
Q  226 tgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggcttaga 305  Q
    ||||||| ||||||| || ||||| ||||| |||||||||||||||||||| | |||||||  |||||| |||| |||||    
T  9903568 tgctatttatgctaaaagcgttactattatacctaaggatattcaacttgccaaaagaatcgcaggcgagagggtttaga 9903647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 12538675 - 12538724
Alignment:
Q  224 tgtgctattcatgctaagagagttaccattatgcctaaggatattcaact 273  Q
    |||||||||||||||||||||||||| || |||||||| | |||||||||    
T  12538675 tgtgctattcatgctaagagagttactatcatgcctaaaggtattcaact 12538724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 24860416 - 24860702
Alignment:
Q  17 ttccgtccaggaacagtcgcattgcgcgaaatccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaa 116  Q
    |||||||| ||||| || ||| | ||||||||||| ||||| || || ||||| |||||||||||  | ||||||||||||||| |  | ||||||||||    
T  24860416 ttccgtcccggaaccgttgcacttcgcgaaatccgcaagtaccaaaaaagcacagagcttctcatccgaaaacttccattccaacgtctcgttcgtgaaa 24860515  T
Q  117 tcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatac 216  Q
    ||||||| ||||||||||| |||||| | || |||||||| ||||||||||| |||||||||||||||||||| ||||| |||||  | ||||| |||||    
T  24860516 tcgctcaagatttcaaaaccgatctccgtttccagagtagcgctgtttctgctcttcaagaagctgctgaagcttatctcgttggactctttgaagatac 24860615  T
Q  217 gaatctttgtgctattcatgctaagagagttaccattatgcctaaggatattcaacttgcaagaagaatcagaggcgaaagggctta 303  Q
     |||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||  | |||||||||||||| ||||||||    
T  24860616 aaatctttgcgctattcatgctaagagagttaccattatgcccaaggatattcaactcgctcgcagaatcagaggcgagagggctta 24860702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 267
Target Start/End: Original strand, 34748655 - 34748875
Alignment:
Q  47 atccgaaagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagat 146  Q
    ||||| ||||| ||||||||||| || || |||||  | ||||| || |||||  |  |||||||||| ||||||||||||||||| ||||||||| | |    
T  34748655 atccgtaagtaccagaagagcaccgaactcctcatccgcaaactccccttccagcgtctggttcgtgagatcgctcaggatttcaagactgatctccgtt 34748754  T
Q  147 ttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagt 246  Q
    | |||||    || || || || || |||||||| ||||| || ||||| |||||| | ||||||||||| || || ||||| |||||||| ||| | ||    
T  34748755 tccagagctccgccgtgtcggcgctgcaagaagcggctgaggcttatctcgttggtctctttgaggatactaacctctgtgccattcatgccaagcgtgt 34748854  T
Q  247 taccattatgcctaaggatat 267  Q
     || || ||||||||||||||    
T  34748855 cactatcatgcctaaggatat 34748875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 53290749 - 53290832
Alignment:
Q  160 tgtttctgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagag 243  Q
    ||||||||| |||||| |||  | |||||| |||||||||||||||||||| ||||| || |||||| | ||||||||||||||    
T  53290749 tgtttctgctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtaccattcatgctaagag 53290832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 44771137 - 44771097
Alignment:
Q  107 gttcgtgaaatcgctcaggatttcaaaactgatctcagatt 147  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  44771137 gttcgtgaaatcgctcaggatttcaaaaccgatctcagatt 44771097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 40035830 - 40035909
Alignment:
Q  53 aagtatcagaagagcactgagcttctcattaggaaacttccattccaaagattggttcgtgaaatcgctcaggatttcaa 132  Q
    |||||||||||||| ||||||||  | || ||||| || |||||||| || |||||||||||||| |||||||| |||||    
T  40035830 aagtatcagaagagtactgagctcttgatcaggaagctcccattccagaggttggttcgtgaaattgctcaggacttcaa 40035909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 40036062 - 40036153
Alignment:
Q  173 caagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaagga 264  Q
    ||||| ||||||||||| |||||||||||| | |||||||| || ||  | |||||||| ||||| ||| ||||||| |||||||| |||||    
T  40036062 caagaggctgctgaagcatatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaagga 40036153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 166 - 276
Target Start/End: Complemental strand, 7594240 - 7594130
Alignment:
Q  166 tgcacttcaagaagctgctgaagcgtatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagagttaccattatgcctaaggat 265  Q
    ||||||||| ||||| ||||| || || || ||||| ||||||||||| || ||||| ||||| |||||||||||||| || || |||||||| ||||||    
T  7594240 tgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggat 7594141  T
Q  266 attcaacttgc 276  Q
    ||||| |||||    
T  7594140 attcagcttgc 7594130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 204
Target Start/End: Complemental strand, 17769342 - 17769233
Alignment:
Q  95 ttccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatc 194  Q
    ||||||||||| ||| | |||||| |  ||||||||||||| |||||| ||||| |||||||| |||||||||| |||||||||||   || ||| ||||    
T  17769342 ttccaaagatttgttagagaaatcacgaaggatttcaaaacagatctccgattttagagtagtactgtttctgctcttcaagaagccagtgtagcttatc 17769243  T
Q  195 ttgttggttt 204  Q
    ||||||||||    
T  17769242 ttgttggttt 17769233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 204
Target Start/End: Complemental strand, 1539294 - 1539185
Alignment:
Q  95 ttccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatc 194  Q
    ||||||||||| ||| | |||||| |  || |||||||||| |||||| ||||| |||||||| |||||||| | |||||||||||   || ||| ||||    
T  1539294 ttccaaagatttgttagagaaatcacgaagtatttcaaaacagatctccgattttagagtagtactgtttcttctcttcaagaagccagtgtagcttatc 1539195  T
Q  195 ttgttggttt 204  Q
    ||||||||||    
T  1539194 ttgttggttt 1539185  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 27440846 - 27440954
Alignment:
Q  96 tccaaagattggttcgtgaaatcgctcaggatttcaaaactgatctcagatttcagagtagtgctgtttctgcacttcaagaagctgctgaagcgtatct 195  Q
    |||||||||| ||| | |||||| |  ||||||||||||| |||||| ||||| |||||||   ||||||||| |||||||||||   || ||| |||||    
T  27440846 tccaaagatttgttagagaaatcacgaaggatttcaaaacagatctccgattttagagtagcattgtttctgctcttcaagaagccagtgtagcttatct 27440945  T
Q  196 tgttggttt 204  Q
    |||||||||    
T  27440946 tgttggttt 27440954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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