View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_40 (Length: 384)
Name: NF18678_low_40
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 64 - 369
Target Start/End: Complemental strand, 7222527 - 7222222
Alignment:
| Q |
64 |
gatggtaaaaatgcttaaactgtcacgctagcatgcaacccatgcaatctctgaactcagctcttatcctattcttccttacacaatctaattaatccat |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222527 |
gatggtaaaaatgcttaaactgtcacgctagcatgcaacccatgcaatctctgaactcagctcttatcctattcttccttacacaatctaattaatccat |
7222428 |
T |
|
| Q |
164 |
agtaccacctagctagctagctagctagtgagttgtagcataaatataacttgcagtttgattgcaataacgctcaaaaaagaagaaaattaagaacaag |
263 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222427 |
agtaccacctagctagctagctagctagggagttgtagcataaatataacttgcagtttgattgcaataacgctcaaaaaagaagaaaattaagaacaag |
7222328 |
T |
|
| Q |
264 |
ctattaaagtacaccaactttgttacgtaatatatatacttattccattgaatggttaattaggtgttcatgtttaggtgaccatgatgaataaccttaa |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222327 |
ctattaaagtacaccaactttgttacgtaatatatatacttattccattgaatggttaattaggtgttcatgtttaggtgaccatgatgaataaccttaa |
7222228 |
T |
|
| Q |
364 |
attaat |
369 |
Q |
| |
|
|||||| |
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| T |
7222227 |
attaat |
7222222 |
T |
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