View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_41 (Length: 362)
Name: NF18678_low_41
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_41 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 185 - 346
Target Start/End: Original strand, 52800054 - 52800215
Alignment:
| Q |
185 |
cataatgaggaagaaaaagagacctgttgaggtctagcagttgtagtagagcgaggatttctctttctagaaacaatggttttgcgttgtttcaactgat |
284 |
Q |
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| T |
52800054 |
cataataaggaagaaagggagacctgttgaggtctagcagttgtagtagagcgaggatttctctttctagaaacaatggttttgcgttgtttcaactgat |
52800153 |
T |
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| Q |
285 |
tttccatgggaccaagcatggtagaagaaccatgaacagtgaggaaaatgggggaaacagaa |
346 |
Q |
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| T |
52800154 |
tttccatgggaccaagcatggtagaggaaccatgaacagtgaggaaaatgggggaaacagaa |
52800215 |
T |
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Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 52799848 - 52800017
Alignment:
| Q |
19 |
taaataacaaagacgttgattccaaatatgttttgaaattggatcaaccaacaaacaaaacaggtactatg-----atgttgaagattgaaaaaacaaag |
113 |
Q |
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| T |
52799848 |
taaataacaaagaagttgattctaaatatgttttgaaattggatcaaccaacaaagaaaacaggtactatgatatgatgttgaagattgaaaaaacaaag |
52799947 |
T |
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| Q |
114 |
tgcacaatatgtaagcaaaaggcttcatttcattgacattgacattgatactataaagttcatatttgttccataa |
189 |
Q |
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| T |
52799948 |
tgcacaatatgtaagcaaaaggcttgatttcattgacattgac------actataaagttcatatttgttccataa |
52800017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 31652 - 31721
Alignment:
| Q |
273 |
gtttcaactgattttccatgggaccaagcatggtagaagaaccatgaacagtgaggaaaatgggggaaac |
342 |
Q |
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| T |
31652 |
gtttcaactgactttccatgggatcaagcatggttgaagagccatgaacagtgaggaaaatgggtgaaac |
31721 |
T |
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