View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_47 (Length: 326)
Name: NF18678_low_47
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_47 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 13121871 - 13122185
Alignment:
| Q |
1 |
tccatcacccatgtgggctaaggtggacatgttgttgtttgaattgaaatgtatggttctagagaatggcatttgaaaaagatatgctcagagatttagt |
100 |
Q |
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| T |
13121871 |
tccatcacccatgtgggctaagatggacatgttgttgtttgaattgaaatgtgcggttctagagaatggcatttgaaaaagatatgctcagagatttagt |
13121970 |
T |
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| Q |
101 |
actgtcctatgaaagttattatcaacatccaactaccagtcaatgcagtgcaaaccatttgatctaaccttaacaaatattgtcatgctatcctaaagca |
200 |
Q |
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| T |
13121971 |
actgtcctatgaatgttattatcaacatccaactaccagtcaatgcagtgcaaaccatttgatctaaccttaacaaatattgtcatgctatcctaaagca |
13122070 |
T |
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| Q |
201 |
aataaaaatgaaacaaaaacttcatactttggccttccnnnnnnnattacatttataaatttataaaattagtgaaagaaaactaccataaaacattacc |
300 |
Q |
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| T |
13122071 |
aataaaaatgaaacaaaaacttcatattttggccttcctttatttattacatttataaatttataaaatgagtgaaagaaagttaccataaaacattaca |
13122170 |
T |
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| Q |
301 |
tgcctgacacaggtt |
315 |
Q |
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| T |
13122171 |
tgcctgactcaggtt |
13122185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 13004827 - 13004766
Alignment:
| Q |
119 |
ttatcaacatccaactaccagtcaatg---cagtgcaaaccatttgatctaaccttaacaaa |
177 |
Q |
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| T |
13004827 |
ttatcaacatccaactaccagtcaatattccagtgcaaaccatttggtctaaccttaacaaa |
13004766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 13111607 - 13111645
Alignment:
| Q |
107 |
ctatgaaagttattatcaacatccaactaccagtcaatg |
145 |
Q |
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| T |
13111607 |
ctatgaatgttgttatcaacatccaactaccagtcaatg |
13111645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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