View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_51 (Length: 314)
Name: NF18678_low_51
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 37992136 - 37991854
Alignment:
| Q |
14 |
aatattaaaactttggaagaactaaaattttgtttatggtgggttacatattgtttgtttaaatagaagtaacagaagtacatttagcccttcaaaaaac |
113 |
Q |
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| T |
37992136 |
aatattaaaactttggaagaactaaaattttgtttatggttggttacatattgtttgtttaaatagaagtaacagaagtacatttagcccttaaaaaaac |
37992037 |
T |
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| Q |
114 |
agaagtacatttaataagtcaaatatttatatttatatacttctcattctgtttcatgtgccttatagtttctacgacctttattccaggctggtcccta |
213 |
Q |
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| T |
37992036 |
agaagtacatttaataagtcaaatatttatatttatatacttgtcattctgtttcatgtgccttatagtttctacgacctttattccaggctggtcccta |
37991937 |
T |
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| Q |
214 |
tccaaagcggtgttgtggtgcaaatcggcaacacggaggacacttccattaattctttccgttatattttcacatgttataaat |
297 |
Q |
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| T |
37991936 |
tcc-aagcggtgttgtggtgcaaatcggcaacaaggaggacacttccattaattctttccgttatattttcacatgttataaat |
37991854 |
T |
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