View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_52 (Length: 313)
Name: NF18678_low_52
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 4492153 - 4492448
Alignment:
| Q |
1 |
agaattgatgactgtagaaacatgtcgatccggtggttttttcggcagcggtggtggcgattgaattaaaaggaaattaattctagcattcgtgtcaata |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4492153 |
agaattgatgactgtagaaacatgtcgatctggtggttttttcggaagcggcggtggcgattgaattaaaaggaaattaattctagcattcgtgtcaata |
4492252 |
T |
|
| Q |
101 |
atttcccttttgatatgagaatttttgccaatgccaatcggaacactgcctttagcagccaaaaaccccctatcagcatctgtctcataataatctgacc |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4492253 |
attgcccttttgatatgagaatttttgccaatgccaatcggaacactgcctttagcagccaaaaaccccctatcagcatctgtctcataataatctgccc |
4492352 |
T |
|
| Q |
201 |
ccattagcaatgtgtcctcaataattgcagnnnnnnncaaatattcctgatcataaatttttgcagtgatgccaaaggttccaacttagtactctt |
296 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
4492353 |
ccattagcaatgtgtcctcaataattgcagtttttttcaaatattcctgatcataaatttttgcagcgatgccaaaggttccaatgtagtactctt |
4492448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 79 - 185
Target Start/End: Complemental strand, 37079600 - 37079494
Alignment:
| Q |
79 |
aattctagcattcgtgtcaataatttcccttttgatatgagaatttttgccaatgccaatcggaacactgcctttagcagccaaaaaccccctatcagca |
178 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37079600 |
aattctagcattcttgtcaataattgcccttttgatatgagaattcttgccaataccaatcggaacactgcctttagcagccaaaaacctcctatcagca |
37079501 |
T |
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| Q |
179 |
tctgtct |
185 |
Q |
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||||||| |
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| T |
37079500 |
tctgtct |
37079494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 37079390 - 37079345
Alignment:
| Q |
184 |
ctcataataatctgaccccattagcaatgtgtcctcaataattgca |
229 |
Q |
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| T |
37079390 |
ctcataataatctgcccccattaacaatgtgtcctcaataattgca |
37079345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 42465877 - 42465791
Alignment:
| Q |
79 |
aattctagcattcgtgtcaataatttcccttttgatatgagaatttttgccaatgccaatcggaacactgcctttagcagccaaaaa |
165 |
Q |
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| T |
42465877 |
aattctagcattcttgtcaacaattgctcttttgatatgggagtttctgccaataccaattggtacactgcctttagcagccaaaaa |
42465791 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 32275247 - 32275189
Alignment:
| Q |
238 |
caaatattcctgatcataaatttttgcagtgatgccaaaggttccaacttagtactctt |
296 |
Q |
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|||||||||||| |||||| |||||| |||||| |||||||||||||| |||||||||| |
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| T |
32275247 |
caaatattcctggtcataactttttggagtgataccaaaggttccaacgtagtactctt |
32275189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 280501 - 280547
Alignment:
| Q |
19 |
aacatgtcgatccggtggttttttcggcagcggtggtggcgattgaa |
65 |
Q |
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|||||||||||||| |||||| |||| || ||||||||||||||||| |
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| T |
280501 |
aacatgtcgatccgatggtttcttcgacaacggtggtggcgattgaa |
280547 |
T |
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