View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_54 (Length: 300)
Name: NF18678_low_54
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_54 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 41104063 - 41103764
Alignment:
| Q |
1 |
aaacaaaacattctcagacgcaatagttgatgaaaacatagaaaccgcacgcactcttataaccaaatggaacactgtctctacttcttctaaccattct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41104063 |
aaacaaaacattctcagacgcaatagttgatgaaaacatagaaaccgcacgcactcttataaccaaatggaacactgtctctacttcttctaaccattct |
41103964 |
T |
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| Q |
101 |
aattctcttttcaccaacactcgtcaagaagccaaacgctatcttaaagccgttaagagtctacaatccgctatgatgtacctcgtcgcacgtgattcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41103963 |
aattctcttttcaccaacactcgtcaagaagccaaacgctatcttaaagccgttaagagtctacaatccgctatgatgtacctcgtcgcacgtgattcca |
41103864 |
T |
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| Q |
201 |
cctccaaaaaactcgttgaagctcaatccttaatgcaactcgccataaagaaactcgaaaatgaattttatggaatattatcacagaatagagaccgatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41103863 |
cctccaaaaaactcgttgaagctcaatccttaatgcaactcgccataaagaaactcgaaaatgaattttatggaatattatcacagaatagagaccgatt |
41103764 |
T |
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