View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_55 (Length: 289)
Name: NF18678_low_55
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 7e-49; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 14396284 - 14396163
Alignment:
| Q |
155 |
cctcaagtcaaagtatatgttctgcatttgtttcaatgcaagtttggcgtcaa--acatggtaagagcatttagcattataatcaatctcgaatacttac |
252 |
Q |
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| T |
14396284 |
cctcaagtcaaagtatatgttctgcatttgtttcaatgcaagtttggcgtcaagcacatagtaagagcatttaacattataatcaatctcgaatacttac |
14396185 |
T |
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| Q |
253 |
ccaactcagaatgtaagtacac |
274 |
Q |
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| T |
14396184 |
ccaactcagaatgtacgtacac |
14396163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 267
Target Start/End: Original strand, 13883397 - 13883519
Alignment:
| Q |
147 |
acaattgacctcaagtcaaagtatatgttctgcatttgtttcaatgcaagtttggcgtcaa--acatggtaagagcatttagcattataatcaatctcga |
244 |
Q |
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|||||||| ||| ||||||||||| |||||| ||| ||||| ||||||||||||| ||||| ||| |||| | ||||||||| ||||| ||||||||| |
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| T |
13883397 |
acaattgatctctagtcaaagtatgtgttcttcatctgtttgaatgcaagtttggtgtcaagcacacagtaaaaacatttagcaatataaacaatctcga |
13883496 |
T |
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| Q |
245 |
atacttacccaactcagaatgta |
267 |
Q |
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| T |
13883497 |
atacttacccaacttagaatgta |
13883519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 267
Target Start/End: Complemental strand, 14392012 - 14391892
Alignment:
| Q |
147 |
acaattgacctcaagtcaaagtatatgttctgcatttgtttcaatgcaagtttggcgtcaaacatggtaagagcatttagcattataatcaatctcgaat |
246 |
Q |
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| T |
14392012 |
acaattgacctcgggtgaaagcatgtgttctgcatctgtttgaatgcaattttggtgtcaatcacagtaaaaacattaagcaatataaacactctcaaat |
14391913 |
T |
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| Q |
247 |
acttacccaactcagaatgta |
267 |
Q |
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| T |
14391912 |
acttacccaactcagaatgta |
14391892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 14396316 - 14396282
Alignment:
| Q |
1 |
ctattatctcttcaatgatccacaaacttgttcct |
35 |
Q |
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| T |
14396316 |
ctattatctcttcaatgatccacaaacttgttcct |
14396282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 13852955 - 13853014
Alignment:
| Q |
147 |
acaattgacctcaagtcaaagtatatgttctgcatttgtttcaatgcaagtttggcgtca |
206 |
Q |
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| T |
13852955 |
acaattgacctatagtgaaagtatgtgttctgcatctgtttgaatgcaagtttggtgtca |
13853014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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