View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_56 (Length: 288)
Name: NF18678_low_56
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_56 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 3643084 - 3643347
Alignment:
| Q |
8 |
gagatgaagaatgaggaagagacaagtagttgtgagaagatcagaagatccacaaagaagtgttgtgaaatatggagagtgtcagaagaatcatgcagct |
107 |
Q |
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| T |
3643084 |
gagaagaagaatgaggaagagacaagtagttgtgagaagatcagaagatccacaaagaagtgtagtgaaatatggagagtgtcagaagaatcatgcagct |
3643183 |
T |
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| Q |
108 |
aatgttggaggttatgctgttgatggttgtagagagttcatgccaagtacaaatggttctctcacttgtgctgcttgtggttgtcacagaaactttcaca |
207 |
Q |
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| T |
3643184 |
aatgttggaggttatgctgttgatggttgtagagagttcatgccaagtacaaatggttctctcacttgtgctgcttgtggttgtcacagaaactttcaca |
3643283 |
T |
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| Q |
208 |
aaagagaagttgaagttgtttctgagagttcttcacctcattcaaatggtacttgaaactgttt |
271 |
Q |
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| T |
3643284 |
aaagagaagttgaagttgtttctgagagttcttcacctcattcaaatggtacttgaaactgttt |
3643347 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 13902387 - 13902315
Alignment:
| Q |
77 |
atatggagagtgtcagaagaatcatgcagctaatgttggaggttatgctgttgatggttgtagagagttcatg |
149 |
Q |
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| T |
13902387 |
atatggtgagtgtcaaaagaatcatgcagcaaatattggagggtatgctgtagatggttgcagagagttcatg |
13902315 |
T |
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Target: scaffold0140 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 32791 - 32852
Alignment:
| Q |
77 |
atatggagagtgtcagaagaatcatgcagctaatgttggaggttatgctgttgatggttgta |
138 |
Q |
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| T |
32791 |
atatggagagtgtcaaaagaatcatgcagcttatagtggaggctatgctgttgatggatgta |
32852 |
T |
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