View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_low_57 (Length: 288)

Name: NF18678_low_57
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_low_57
NF18678_low_57
[»] chr4 (1 HSPs)
chr4 (10-269)||(45394317-45394576)
[»] chr5 (2 HSPs)
chr5 (10-178)||(40367217-40367385)
chr5 (174-269)||(40371893-40371987)
[»] chr2 (4 HSPs)
chr2 (10-186)||(40584077-40584255)
chr2 (10-182)||(20606615-20606787)
chr2 (205-256)||(40583968-40584019)
chr2 (209-266)||(20606502-20606559)
[»] chr7 (3 HSPs)
chr7 (10-182)||(30580960-30581132)
chr7 (10-182)||(43659921-43660094)
chr7 (209-253)||(43660150-43660194)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 269
Target Start/End: Original strand, 45394317 - 45394576
Alignment:
Q  10 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatcattatgcattgaatttgaatgaaatcaaggtggattgtgaatcaat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  45394317 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatcattatgcattgaatttgaatgaaatcaatgtggattgtgaatcaat 45394416  T
Q  110 tttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaacatatagaatagtcgcattgtttcaagt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |    
T  45394417 tttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaacatatggaacagtcgcattatttcaaat 45394516  T
Q  210 ccatatttccattgcagaccttcaattaatgcttaaagcattatgttgtagtgtgtcttg 269  Q
    |||||||||||||||| ||||| | |||||||||||| ||||||||||||||||||||||    
T  45394517 ccatatttccattgcacacctttagttaatgcttaaaacattatgttgtagtgtgtcttg 45394576  T

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Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 178
Target Start/End: Original strand, 40367217 - 40367385
Alignment:
Q  10 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatcattatgcattgaatttgaatgaaatcaaggtggattgtgaatcaat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40367217 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatcattatgcattgaatttgaatgaaatcaaggtggattgtgaatcaat 40367316  T
Q  110 tttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaag 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40367317 tttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaag 40367385  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 40371893 - 40371987
Alignment:
Q  174 agaagaaacatatagaatagtcgcattgtttcaagtccatatttccattgcagaccttcaattaatgcttaaagcattatgttgtagtgtgtcttg 269  Q
    ||||||||||||| ||| | ||||||| ||||||||||||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||    
T  40371893 agaagaaacatatggaacaatcgcattatttcaagtccatatt-ccattacacaccttcagttaatgcttaaagcattatgttgtagtgtgtcttg 40371987  T

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Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 40584255 - 40584077
Alignment:
Q  10 attattctcattgaaattatgaagat-aaaagtttattttttaaattatcaaatcatt-atgcattgaatttgaatgaaatcaaggtggattgtgaatca 107  Q
    |||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||| ||||| |  |||||||    
T  40584255 attattcttattgaaattatgaagatgaaaaatttatttttaaaattatcaaatcatttatgcaatgaatttgaatgaaatcatggtgggtcatgaatca 40584156  T
Q  108 attttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaacatat 186  Q
    |||||||||||| | ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||    
T  40584155 attttgttgagacgagtggttacttacaacaaattgtaactcaaatttgcttaaccaaacatggtgaggagaaagatat 40584077  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 20606787 - 20606615
Alignment:
Q  10 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca-ttatgcattgaatttgaatgaaatcaaggtggattgtgaatcaa 108  Q
    |||||||||||||||||||||||||| || | ||  ||||||||||| ||||| | |||||||||||||||||||  |||||||| || |  ||||||||    
T  20606787 attattctcattgaaattatgaagatgaagggtttatttttaaattaacaaattatttatgcattgaatttgaatataatcaagg-gggtcatgaatcaa 20606689  T
Q  109 ttttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaac 182  Q
    |||||| ||||||||    ||| |  |||||||||| ||| | ||||||||||||||| |||||||| ||||||    
T  20606688 ttttgtagagaggggaccatacgtgtaacaaattgttacttaaatttgcttaaccaaaaatggtgaggagaaac 20606615  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 256
Target Start/End: Complemental strand, 40584019 - 40583968
Alignment:
Q  205 caagtccatatttccattgcagaccttcaattaatgcttaaagcattatgtt 256  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||||    
T  40584019 caagtccatatttccattgcacaccttcaattatcgcttaaagcattatgtt 40583968  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 20606559 - 20606502
Alignment:
Q  209 tccatatttccattgcagaccttcaattaatgcttaaagcattatgttgtagtgtgtc 266  Q
    ||||||||||||||||| |||||| ||||  ||||||| ||||||||| |||||||||    
T  20606559 tccatatttccattgcacaccttcgattatggcttaaatcattatgttttagtgtgtc 20606502  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 30581132 - 30580960
Alignment:
Q  10 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca-ttatgcattgaatttgaatgaaatcaaggtggattgtgaatcaa 108  Q
    |||||||||||||||||||||||||| || | ||  ||||||||||| ||||| | |||||||||||||||||||  |||||||| || |  ||||||||    
T  30581132 attattctcattgaaattatgaagatgaagggtttatttttaaattaacaaattatttatgcattgaatttgaatataatcaagg-gggtcatgaatcaa 30581034  T
Q  109 ttttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaac 182  Q
    |||||| ||||||||    ||| |  |||||||||| ||| | ||||||||||||||| |||||||| ||||||    
T  30581033 ttttgtagagaggggaacatacgtgtaacaaattgttacttaaatttgcttaaccaaaaatggtgaggagaaac 30580960  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 43659921 - 43660094
Alignment:
Q  10 attattctcattgaaattatgaagataaaagtttattttttaaattatcaaatca--ttatgcattgaatttgaatgaaatcaaggtggattgtgaatca 107  Q
    |||||||||||||||||||||||||| || | ||  ||||||||||||||||| |  |||||||||||||||||||  |||||||| |  |  |||||||    
T  43659921 attattctcattgaaattatgaagatgaagggtttatttttaaattatcaaattattttatgcattgaatttgaatataatcaagg-gagtcatgaatca 43660019  T
Q  108 attttgttgagaggggtgtttacttacaacaaattgtaactcacatttgcttaaccaaacatggtgagaagaaac 182  Q
    ||||||| ||||||||    ||| |  |||||||||| ||| | ||||||||||||||| |||||||| ||||||    
T  43660020 attttgtagagaggggaccatacgtgtaacaaattgttacttaaatttgcttaaccaaaaatggtgaggagaaac 43660094  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 43660150 - 43660194
Alignment:
Q  209 tccatatttccattgcagaccttcaattaatgcttaaagcattat 253  Q
    ||||||||||||||||| |||||| ||||| ||||||| ||||||    
T  43660150 tccatatttccattgcacaccttctattaaggcttaaatcattat 43660194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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