View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_59 (Length: 275)
Name: NF18678_low_59
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_59 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 275
Target Start/End: Complemental strand, 15565148 - 15564881
Alignment:
| Q |
8 |
tggacatcatcaaagaaattaaggattcaagtggcttttgttgatatatttgtagttgggttttgcatgtttcttttctgggaaattcacatatgatttt |
107 |
Q |
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| T |
15565148 |
tggaaatcatcaaagaatataaggattcaagtggcttttgttgatatatttgtagttgggttttgcatgtttcttttctgggaaattcacatatgatttt |
15565049 |
T |
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| Q |
108 |
gtcctcattattaacagtatcaatgttccctggacagtcctttcaagttttgagaagattttcaactatgatacttaatactaattatgaatatgtattt |
207 |
Q |
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| T |
15565048 |
gtcctcattattaacagtatcaatgttccctggacagtcctttcaagttttgagaagattttcaactatgatacttaatactaattatgaatatgtattt |
15564949 |
T |
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| Q |
208 |
atgttttgtgcctctaggtttcacgattccttggaccgtctacctccattatcatcttcgctttttcc |
275 |
Q |
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| T |
15564948 |
atgttttgtgcctctaggtttcacgattccttggaccgtctacctccattatcatcttcgctttttcc |
15564881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 8 - 275
Target Start/End: Complemental strand, 15577795 - 15577528
Alignment:
| Q |
8 |
tggacatcatcaaagaaattaaggattcaagtggcttttgttgatatatttgtagttgggttttgcatgtttcttttctgggaaattcacatatgatttt |
107 |
Q |
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| T |
15577795 |
tggaaatcatcaaagaatataaggattcaagtggcttttgttgatatatttgtagttgggttttgcatgtttcttttctgggaaattcacatatgatttt |
15577696 |
T |
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| Q |
108 |
gtcctcattattaacagtatcaatgttccctggacagtcctttcaagttttgagaagattttcaactatgatacttaatactaattatgaatatgtattt |
207 |
Q |
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| T |
15577695 |
gtcctcattattaacagtatcaatgttccctggacagtcctttcaagttttgagaagattttcaactatgatacttaatactaattatgaatatgtattt |
15577596 |
T |
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| Q |
208 |
atgttttgtgcctctaggtttcacgattccttggaccgtctacctccattatcatcttcgctttttcc |
275 |
Q |
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| T |
15577595 |
atgttttgtgcctctaggtttcacgattccttggaccgtctacctccattatcatcttcgctttttcc |
15577528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 275
Target Start/End: Complemental strand, 15545237 - 15545154
Alignment:
| Q |
192 |
ttatgaatatgtatttatgttttgtgcctctaggtttcacgattccttggaccgtctacctccattatcatcttcgctttttcc |
275 |
Q |
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| T |
15545237 |
ttatgaatatgtatttctgttctgtgcctccaggtttcactactcgtttgactgtctacctccgttgccatcttcgctttttcc |
15545154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 275
Target Start/End: Complemental strand, 15525391 - 15525301
Alignment:
| Q |
185 |
atactaattatgaatatgtatttatgttttgtgcctctaggtttcacgattccttggaccgtctacctccattatcatcttcgctttttcc |
275 |
Q |
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| T |
15525391 |
atactaattatgaatatttatttctgttctgtgccactaggctcgatgattccttcggctgtctacctctgttgtcatcttcgctttttcc |
15525301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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