View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_6 (Length: 636)
Name: NF18678_low_6
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 629
Target Start/End: Complemental strand, 40583816 - 40583188
Alignment:
| Q |
1 |
tgcaatttaaagatgttgttctctactgtctactcaaaggtgtccgaacttaacaattaagtaactatttataaagatggaacgactgatttgatgggtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40583816 |
tgcaatttaaagatgttgttctctactgtctactcaaaggcgtccgaacttaacaattaagtaactatttataaagatggaacgactgatttgatgggtc |
40583717 |
T |
|
| Q |
101 |
agttgaaatggtttaacgatccatacctatgacctatccaattttgtgtccagtttccatattcaccaataactagttgttcgtatgtgtaactttttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
40583716 |
agttgaaatggtttaacgatccatacctatgacctatccaattttgtgtccagtttccatattcaccaataactagttgttcgtatgcgtaactttttgt |
40583617 |
T |
|
| Q |
201 |
aggagtcgaacaattattatttatgccatttgttttttgacagaatctttttgaacttgttattatacataacattatcgtattgcaattctattacaag |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40583616 |
aggagtagaacaattattatttatgccatttgttttttgacagaatctttttgaacttgttattatacataacattatcgtattgcaattctattacgag |
40583517 |
T |
|
| Q |
301 |
atcaacatacataatacttagaaaattactcttctcactttttaaattgctcttttttaactgtcgatgccccaactgcaattaagtaccattgaacata |
400 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40583516 |
agcaacatacataatacttagaaaattactcttctcactttttaaattgctcttttttaactgtcgatgccccaattgcaattaagtaccattgaacata |
40583417 |
T |
|
| Q |
401 |
ttctagaaaacttcaatattttttaaatcggtttaactaatcttaaaaatgtcaaacacaattaactatccttaggtcaacgatagttgaaaaaataaag |
500 |
Q |
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| T |
40583416 |
ttctagaaaacttcgatattttttaaatcagtttaactaatcttaaaaatgtcgaacacaattaactgtcgttaggccaacgacaattgaaaaaataaag |
40583317 |
T |
|
| Q |
501 |
caatttaaaaagtaagaagagcaattttctaatacttaccttaacaggcctacgagttagtagtggacccaacagttaggcccaagttcccgacatatct |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40583316 |
caatttaaaaagtaagaagagcaattttctaatacttaccgtaacaggcctacgagttagtagtggacccaacagttaggcccaagttcccgacatatct |
40583217 |
T |
|
| Q |
601 |
ttcctttctgttagttggcctctctgctc |
629 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
40583216 |
ttcctttctgttagttggcctctctgctc |
40583188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 6521124 - 6521173
Alignment:
| Q |
418 |
attttttaaatcggtttaactaatcttaaaaatgtcaaac-acaattaac |
466 |
Q |
| |
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||||||||||||| |||||| ||||||||||||||||||| ||||||||| |
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| T |
6521124 |
attttttaaatcgatttaaccaatcttaaaaatgtcaaacgacaattaac |
6521173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 11442891 - 11442846
Alignment:
| Q |
322 |
aaaattactcttctcactttttaaattgctctttttt-aactgtcg |
366 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
11442891 |
aaaatcactcttctcacttcttaaattgctcttttttcaactgtcg |
11442846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 1703652 - 1703696
Alignment:
| Q |
322 |
aaaattactcttctcactttttaaattgctcttttttaactgtcg |
366 |
Q |
| |
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|||||||||||| ||| ||||||||||||| ||||||||| |||| |
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| T |
1703652 |
aaaattactcttttcaatttttaaattgcttttttttaaccgtcg |
1703696 |
T |
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