View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18678_low_60 (Length: 273)
Name: NF18678_low_60
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 23730083 - 23729860
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23730083 |
aaataaagcactgcagaattgtgcaaacaaaacagaaacgttaaatattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
23729984 |
T |
|
| Q |
101 |
aaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaatatcgaagtattt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
23729983 |
aaaatattgaagaatttaaaaccatgatttagagacgagatgaatacgccaatagaacaaatacgatagaattatttagtaccaaaatatcgaagtattt |
23729884 |
T |
|
| Q |
201 |
tggacagcgtgtgaaagatttgag |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
23729883 |
tggacagcgtgtgaaagatttgag |
23729860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 23732955 - 23732732
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23732955 |
aaataaagcactgcagaattgtgcaaacaaaacagaaacgctaaatattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
23732856 |
T |
|
| Q |
101 |
aaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaatatcgaagtattt |
200 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| ||||||| ||| |||||| ||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
23732855 |
aaaatatcaaagaatttaaaagcatgatttagagacgaaatgaatacgcctatagaacaaatacgatagaattatttagtaccaaaatatcgaagtattt |
23732756 |
T |
|
| Q |
201 |
tggacagcgtgtgaaagatttgag |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
23732755 |
tggacagcgtgtgaaagatttgag |
23732732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 23780120 - 23780308
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
100 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |||||||| |||||||||||||| | ||||||||||| ||||||||||||||||| ||| |||||| |
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| T |
23780120 |
aaataaagcacagcagaaatgtgcaaacaaaacagaaacgccgaaaattgcagcaaactgaagtgattatgaagaaatttaaaccaagaacgcgacagtg |
23780219 |
T |
|
| Q |
101 |
aaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata |
189 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
23780220 |
aaaatatcgaagtaattaaaaccatgatttagagaggagatgaatacgccaatagaataaataagatagcattattcagtagcaaaata |
23780308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 23867073 - 23867261
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
100 |
Q |
| |
|
||||||||||| |||||| |||||||||||| |||||||| |||||||||||||| | ||||||||||| ||||||||||||||||| ||| |||||| |
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|
| T |
23867073 |
aaataaagcacagcagaaatgtgcaaacaaaacagaaacgccgaaaattgcagcaaactgaagtgattatgaagaaatttaaaccaagaacgcgacagtg |
23867172 |
T |
|
| Q |
101 |
aaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata |
189 |
Q |
| |
|
||||||| |||| | |||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
23867173 |
aaaatatcgaagtaattaaaaccatgatttagagaggagatgaatacgccaatagaataaataagatagcattattcagtagcaaaata |
23867261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 23768871 - 23769058
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
100 |
Q |
| |
|
||||||| | ||||||| |||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
23768871 |
aaataaaccgctgcagacttgttcaaacaaaacagaaacactaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagaacgcaacagtt |
23768970 |
T |
|
| Q |
101 |
aaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata |
189 |
Q |
| |
|
||||||| |||||| ||||||||| |||| |||| || ||||| | || |||||||||| |||||||| ||||||||| ||||||||| |
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|
| T |
23768971 |
aaaatatcgaagaaattaaaaccaagattacgagaggaaatgaacacgctaatagaataattaagatagcattattcag-accaaaata |
23769058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 23818719 - 23818906
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagagcgcaacagtg |
100 |
Q |
| |
|
||||||| | ||||||| |||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
23818719 |
aaataaaccgctgcagacttgttcaaacaaaacagaaacactaaaaattgcagcaaattaaagtgattatgcagaaatttaaaccaagaacgcaacagtt |
23818818 |
T |
|
| Q |
101 |
aaaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata |
189 |
Q |
| |
|
||||||| |||||| ||||||||| |||| |||| || ||||| | || |||||||||| |||||||| ||||||||| ||||||||| |
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|
| T |
23818819 |
aaaatatcgaagaaattaaaaccaagattacgagaggaaatgaacacgctaatagaataattaagatagcattattcag-accaaaata |
23818906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 23645237 - 23645051
Alignment:
| Q |
5 |
aaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgattat---gcagaaatttaaaccaagagcgcaacagtga |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||| ||||||| ||||||||||||||||||| | ||||||||| |
|
|
| T |
23645237 |
aaagcactgcagaattgtgcaaacaaaacagaa-cgctaaaaattgcagcaaactaaaatgattattatgcagaaatttaaaccaagaacacaacagtga |
23645139 |
T |
|
| Q |
102 |
aaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata |
189 |
Q |
| |
|
|||||| |||||| ||||||| | |||| |||| || ||| | | || |||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
23645138 |
aaatatcgaagaaattaaaactaagattacgagaggaaatgtacacgctaatagaataaataagatatcattgttcactaccaaaata |
23645051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 23813337 - 23813523
Alignment:
| Q |
5 |
aaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtgatta---tgcagaaatttaaaccaagagcgcaacagtga |
101 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || |||||||||||||||| |||| |||||| |||||||||||||||||||| | ||||||||| |
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|
| T |
23813337 |
aaagcactgcagaattgtgcaaacaaaacagaa-cgctaaaaattgcagcaaactaaaatgattattatgcagaaatttaaaccaagaacacaacagtga |
23813435 |
T |
|
| Q |
102 |
aaatattgaagaatttaaaaccatgatttagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata |
189 |
Q |
| |
|
|||||| |||||| ||||||| | |||| |||| || ||| | | || |||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
23813436 |
aaatatcgaagaaattaaaactaagattacgagaggaaatgtacacgctaatagaataaataagatatcattgttcactaccaaaata |
23813523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 23674624 - 23674425
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtg---attatgcagaaa-tttaaaccaagagcgcaac |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |||| || |||||||||||| |||||||||||| |||||| |
|
|
| T |
23674624 |
aaataaagcactgcagaattgtgcaaacaaaacagaaatgctaaaaattgcagcaaactaaactgattattatgcagaaattttaaaccaagaacgcaac |
23674525 |
T |
|
| Q |
97 |
agtgaaaatattgaagaatttaaaaccatgatt-------tagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata |
189 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||| | |||| || ||||| | || |||||| |||||||||| | ||| ||||||||||||||| |
|
|
| T |
23674524 |
agtgaaaatatcgaagaaattaaaaccaagattacgagagtcgagaggaaatgaacacgcaaatagagtaaataagattgcattgttcagtaccaaaata |
23674425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 23860187 - 23860386
Alignment:
| Q |
1 |
aaataaagcactgcagaattgtgcaaacaaatcagaaacgttaaaaattgcagcaaattaaagtg---attatgcagaaa-tttaaaccaagagcgcaac |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| | |||||||||||||||| |||| || |||||||||||| |||||||||||| |||||| |
|
|
| T |
23860187 |
aaataaagcactgcagaattgtgcaaacaaaacagaaatgctaaaaattgcagcaaactaaactgattattatgcagaaattttaaaccaagaacgcaac |
23860286 |
T |
|
| Q |
97 |
agtgaaaatattgaagaatttaaaaccatgatt-------tagagacgagatgaatatgccaatagaataaataagatagaattattcagtaccaaaata |
189 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||| | |||| || ||||| | || |||||| |||||||||| | ||| ||||||||||||||| |
|
|
| T |
23860287 |
agtgaaaatatcgaagaaattaaaaccaagattacgagagtcgagaggaaatgaacacgcaaatagagtaaataagattgcattgttcagtaccaaaata |
23860386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 221
Target Start/End: Complemental strand, 23645027 - 23644999
Alignment:
| Q |
193 |
aagtattttggacagcgtgtgaaagattt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23645027 |
aagtattttggacagcgtgtgaaagattt |
23644999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 23813547 - 23813575
Alignment:
| Q |
193 |
aagtattttggacagcgtgtgaaagattt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
23813547 |
aagtattttggacagcgtgtgaaagattt |
23813575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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