View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_63 (Length: 265)
Name: NF18678_low_63
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 25108185 - 25107985
Alignment:
| Q |
18 |
ggtacaggagcaatagcaacttgcatgcatgtatggttgtattcttagattagaatcttgaaccagtatttaattatattgaaacatatgcatatgcatg |
117 |
Q |
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| T |
25108185 |
ggtacaggagcaatagcaacttgcatgcatgtatggttgtattcttagattagaatcttaaaccagtatttaattatattgaagcatatgcatatg---- |
25108090 |
T |
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| Q |
118 |
ttcattcaaagaaagtaagacatggattctataatccggtcattcaaagtatatcaattaataaagcataaacttttgtgtatgatatcatggaattgga |
217 |
Q |
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| T |
25108089 |
ttcgttcaaagaaagtaagacatggattctataatccggtcattcaaagtatattaattaataaagcataaacttttgtgtatgatatcatggaattgga |
25107990 |
T |
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| Q |
218 |
tcctc |
222 |
Q |
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||||| |
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| T |
25107989 |
tcctc |
25107985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 13234474 - 13234409
Alignment:
| Q |
49 |
tatggttgtattcttagattagaatcttgaaccagtatttaattatattgaaacatatgcatatgc |
114 |
Q |
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| T |
13234474 |
tatggttgtattcttagattggaatattaaatcgatatttagttatattgaatcatatacatatgc |
13234409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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