View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_low_65 (Length: 260)

Name: NF18678_low_65
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_low_65
NF18678_low_65
[»] chr8 (5 HSPs)
chr8 (1-248)||(15151082-15151343)
chr8 (1-62)||(16821972-16822033)
chr8 (4-61)||(19442366-19442423)
chr8 (4-61)||(19578517-19578574)
chr8 (6-62)||(26738332-26738388)
[»] chr1 (4 HSPs)
chr1 (1-59)||(23971106-23971164)
chr1 (1-68)||(2900379-2900446)
chr1 (1-63)||(28538479-28538541)
chr1 (1-63)||(27908274-27908336)
[»] chr5 (2 HSPs)
chr5 (1-61)||(15023636-15023696)
chr5 (3-63)||(2808440-2808500)
[»] chr2 (6 HSPs)
chr2 (3-63)||(17673481-17673541)
chr2 (1-59)||(1644587-1644645)
chr2 (1-59)||(19569559-19569617)
chr2 (1-63)||(24578611-24578673)
chr2 (3-63)||(17628410-17628470)
chr2 (6-62)||(37081397-37081453)
[»] chr6 (3 HSPs)
chr6 (1-63)||(27991585-27991647)
chr6 (1-63)||(13627803-13627865)
chr6 (87-122)||(27991667-27991702)
[»] chr4 (4 HSPs)
chr4 (1-59)||(2946637-2946695)
chr4 (4-60)||(6136078-6136134)
chr4 (1-61)||(17405213-17405273)
chr4 (16-63)||(14134009-14134056)
[»] chr7 (3 HSPs)
chr7 (1-52)||(4634048-4634099)
chr7 (1-59)||(32238964-32239022)
chr7 (4-58)||(29676952-29677006)
[»] chr3 (1 HSPs)
chr3 (1-63)||(9021845-9021907)


Alignment Details
Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 15151343 - 15151082
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgggattannnnnnnnnnnacagagcaccactctcttgat 100  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||           |||||||||||||||||||||    
T  15151343 atgtcaaatgaaatgtttaatagtcttttcgttcatttctgttaattttatcattttttgtgggattattttttttt--acagagcaccactctcttgat 15151246  T
Q  101 ttgctcaagacatccaaattcataagaccgaccctgattacttcattataattgcat----------------catgaaatcataataagtttcaacaat 184  Q
    |||  |||||||||||||||||||||| |||||||||||||||||||||||||||||                |||||||||||||||||||||||||||    
T  15151245 ttgtccaagacatccaaattcataagatcgaccctgattacttcattataattgcattatgatttaattgcatcatgaaatcataataagtttcaacaat 15151146  T
Q  185 ttcataaaaccaacaccaatgctaccttgatcttcattgtgtctacaaaatttaacagattttg 248  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15151145 ttcataaaaccaacaccaatgctaccttgatcttcattgtatctacaaaatttaacagattttg 15151082  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 16822033 - 16821972
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtg 62  Q
    ||||||||||||||||||||||||||||  | |||||||||||||| |||||| ||||||||    
T  16822033 atgtcaaatgaaatgtttaatagtcttttagatcatttctcttaatcttatcaatttttgtg 16821972  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 19442423 - 19442366
Alignment:
Q  4 tcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgt 61  Q
    ||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||    
T  19442423 tcaaatgaaatgtttaatagtattttcattcatttctcttaatcttatcattttttgt 19442366  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 19578574 - 19578517
Alignment:
Q  4 tcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgt 61  Q
    ||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||    
T  19578574 tcaaatgaaatgtttaatagtattttcattcatttctcttaatcttatcattttttgt 19578517  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 26738332 - 26738388
Alignment:
Q  6 aaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtg 62  Q
    ||||||||||| | ||||||||| | ||||||||||||| | |||| ||||||||||    
T  26738332 aaatgaaatgtatgatagtcttttcattcatttctcttattcttataattttttgtg 26738388  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23971106 - 23971164
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcatttttt 59  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  23971106 atgtcaaatgaaatgtttaatagtctttcagttcatttctcttaatcttatcatttttt 23971164  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 2900446 - 2900379
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgggatta 68  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||| ||||    
T  2900446 atgtcaaatgaaatgtttaatagtctttccattcatttctcttaatcttgtcattttctgtggaatta 2900379  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 28538541 - 28538479
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 63  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||||||||||    
T  28538541 atgtcaaatgaaatgtttcataatctttccattcatttctcttaatcttatcattttttgtgg 28538479  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27908336 - 27908274
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 63  Q
    |||| ||||||||| |||| || ||||||| ||||||| ||||||| |||| |||||||||||    
T  27908336 atgtgaaatgaaatatttattaatctttccattcatttttcttaatcttataattttttgtgg 27908274  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15023636 - 15023696
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgt 61  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  15023636 atgtcaaatgaaatgtttaatagtctttccattcatatctcttaatcttatcattttttgt 15023696  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 2808500 - 2808440
Alignment:
Q  3 gtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 63  Q
    |||||||||||| ||||||||| |||||||| |||||||||| | ||||||||||||||||    
T  2808500 gtcaaatgaaatatttaatagtttttccgttaatttctcttactcttatcattttttgtgg 2808440  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 17673481 - 17673541
Alignment:
Q  3 gtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 63  Q
    |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||    
T  17673481 gtcaaatgaaatgtttcatagtctttccattcatttctcttaatcttatcattttttgtgg 17673541  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 1644645 - 1644587
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcatttttt 59  Q
    |||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  1644645 atgtcaaatgaaatgtttaatagtctttccatttatttctcttaatcttatcatttttt 1644587  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19569617 - 19569559
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcatttttt 59  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  19569617 atgtcaaatgaaatgtttaatagtctttccattcatttatcttaatcttatcatttttt 19569559  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24578673 - 24578611
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 63  Q
    |||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||    
T  24578673 atgtcaaatgaagtgtttaatagtattttcattcatttctcttaattttatcattttttgtgg 24578611  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 17628410 - 17628470
Alignment:
Q  3 gtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 63  Q
    |||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||    
T  17628410 gtcaaatgaaatgtttcatagtctttccattcgtttctcttaatcttatcattttttgtgg 17628470  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 37081397 - 37081453
Alignment:
Q  6 aaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtg 62  Q
    |||| |||||||| ||||||||||||||||||||||||| | ||||||| |||||||    
T  37081397 aaataaaatgtttgatagtctttccgttcatttctcttattcttatcatgttttgtg 37081453  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 27991585 - 27991647
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 63  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  27991585 atgtaaaatgaaatgtttaatagtctttccattcatttcccttaatcttatcattttttgtgg 27991647  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13627865 - 13627803
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 63  Q
    ||||||||| ||||||||||||||| || |||||| |||| ||||| ||||||||||||||||    
T  13627865 atgtcaaataaaatgtttaatagtcatttcgttcacttcttttaatcttatcattttttgtgg 13627803  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 27991667 - 27991702
Alignment:
Q  87 accactctcttgatttgctcaagacatccaaattca 122  Q
    |||||||||||||||||| |||||||||||||||||    
T  27991667 accactctcttgatttgcccaagacatccaaattca 27991702  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2946695 - 2946637
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcatttttt 59  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||    
T  2946695 atgtcaaatgaaatgttaaatagtctttccattcatttctcttaatcttatcatttttt 2946637  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 6136134 - 6136078
Alignment:
Q  4 tcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttg 60  Q
    ||||||||||||||||||||||||||| |||||||||||| || |||||||||||||    
T  6136134 tcaaatgaaatgtttaatagtctttccattcatttctcttgatcttatcattttttg 6136078  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 17405213 - 17405273
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgt 61  Q
    |||||||||||||||||||||||||||  | ||||||| ||||||| ||||||||||||||    
T  17405213 atgtcaaatgaaatgtttaatagtcttctcattcatttatcttaatcttatcattttttgt 17405273  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 14134056 - 14134009
Alignment:
Q  16 tttaatagtctttccgttcatttctcttaattttatcattttttgtgg 63  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  14134056 tttaatagtttttccgttcatttctcttaatcttatcattttttgtgg 14134009  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4634048 - 4634099
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatc 52  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  4634048 atgtcatatgaaatgtttaatagtctttccgttcatttcttttaattttatc 4634099  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32238964 - 32239022
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcatttttt 59  Q
    |||||||||||||| |||||||||||||  |||||||| ||||||| ||||||||||||    
T  32238964 atgtcaaatgaaatatttaatagtcttttggttcatttttcttaatcttatcatttttt 32239022  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 29676952 - 29677006
Alignment:
Q  4 tcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttt 58  Q
    ||||||||||| |||||||||||||  | |||||||||||||| |||| ||||||    
T  29676952 tcaaatgaaatatttaatagtctttgagctcatttctcttaatcttataattttt 29677006  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 9021845 - 9021907
Alignment:
Q  1 atgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 63  Q
    |||||||||||||||||||||||| || || ||||||||| |||||  |||||||||||||||    
T  9021845 atgtcaaatgaaatgtttaatagttttccctttcatttcttttaatcgtatcattttttgtgg 9021907  T

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