View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_low_68 (Length: 249)

Name: NF18678_low_68
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_low_68
NF18678_low_68
[»] chr2 (2 HSPs)
chr2 (3-156)||(17595740-17595893)
chr2 (174-242)||(17595684-17595752)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 156
Target Start/End: Complemental strand, 17595893 - 17595740
Alignment:
Q  3 ataaattaaattaagtgacgacaaaaataattttctttaaaataaaatcccttgttattgattttttgttttgctaatgaatgcattgtaannnnnnnna 102  Q
    |||||| || ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |    
T  17595893 ataaatcaagttaagggacgacgaaaataattttgtttaaaataaaatcccttgttattgattttttgttttgctaatgaatgcattgtaatttttttaa 17595794  T
Q  103 aaagcacatgaagctcaaagggtaacaaaaggttttatcaagtaacaataatgt 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17595793 aaagcacatgaagctcaaagggtaacaaaaggttttatcaagtaacaataatgt 17595740  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 17595752 - 17595684
Alignment:
Q  174 gtaacaataatgtgtatatacaagtaaatgaataatacctttctatcccatccaatgtttagtataatc 242  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  17595752 gtaacaataatgtatatatacaaagaaatgaataatacctttctatcccatccaatgtttagtacaatc 17595684  T

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