View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_low_69 (Length: 249)

Name: NF18678_low_69
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_low_69
NF18678_low_69
[»] chr2 (3 HSPs)
chr2 (2-239)||(8021124-8021356)
chr2 (130-234)||(22792281-22792385)
chr2 (194-234)||(22965811-22965851)
[»] chr3 (22 HSPs)
chr3 (98-238)||(28152035-28152175)
chr3 (98-238)||(27920590-27920730)
chr3 (98-238)||(30993721-30993861)
chr3 (98-239)||(27954559-27954700)
chr3 (98-238)||(8538720-8538860)
chr3 (110-237)||(27430588-27430715)
chr3 (98-234)||(11421610-11421743)
chr3 (98-237)||(28037895-28038034)
chr3 (98-236)||(28163032-28163170)
chr3 (96-237)||(28479461-28479602)
chr3 (96-237)||(28508644-28508785)
chr3 (122-238)||(17744115-17744231)
chr3 (122-238)||(19045435-19045551)
chr3 (98-237)||(28057568-28057707)
chr3 (98-237)||(28067993-28068132)
chr3 (98-238)||(18078836-18078976)
chr3 (193-238)||(27458432-27458477)
chr3 (173-237)||(26138821-26138885)
chr3 (98-237)||(26204229-26204365)
chr3 (200-237)||(26109937-26109974)
chr3 (200-237)||(28187144-28187181)
chr3 (122-237)||(28136724-28136839)
[»] scaffold0922 (1 HSPs)
scaffold0922 (44-238)||(2075-2264)
[»] scaffold0257 (1 HSPs)
scaffold0257 (122-237)||(19507-19622)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 8021124 - 8021356
Alignment:
Q  2 ttcaaagtctactcaaggtattttattgcatcannnnnnnnaaattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcag 101  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||     ||    
T  8021124 ttcaaagtctactcaaggtattttattgcatcatttttttaaaattaattttctagtgctcaaatatgcataaacattatttcatgtactctc-----ag 8021218  T
Q  102 gggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaatt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8021219 gggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaatt 8021318  T
Q  202 gtctttgttgactgatttccttgttaagcatccttcat 239  Q
    |||| |||||||||||||||||||||||||||||||||    
T  8021319 gtctctgttgactgatttccttgttaagcatccttcat 8021356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 22792281 - 22792385
Alignment:
Q  130 aagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaag 229  Q
    ||||||| |||| ||||||| | ||||||||||| | || || ||| ||||| |||| | |   ||||| ||||||||||||||||||||| ||||||||    
T  22792281 aagttctccttgtattgtcaaatgggagcttgagcaactggtctccgagaattatttggattacgagaacttgtctttgttgactgatttctttgttaag 22792380  T
Q  230 catcc 234  Q
     ||||    
T  22792381 tatcc 22792385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 22965811 - 22965851
Alignment:
Q  194 gagaaattgtctttgttgactgatttccttgttaagcatcc 234  Q
    ||||| ||||||||||||||||||||| |||||||| ||||    
T  22965811 gagaacttgtctttgttgactgatttctttgttaagtatcc 22965851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 28152035 - 28152175
Alignment:
Q  98 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 197  Q
    |||||||| |||||||||| |||||||||||||||||||||||   |||||||  ||||||||||||||||||| ||||| |||||||| ||||||||||    
T  28152035 tcaggggacccttctcaaatagatgaagatttaagttcttcttttgttgtcaccggggagcttgagaatctagtctccaataatcatttggctattgaga 28152134  T
Q  198 aattgtctttgttgactgatttccttgttaagcatccttca 238  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  28152135 aattgtctttgttgactgacttccttgttaagcatccttca 28152175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 27920590 - 27920730
Alignment:
Q  98 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 197  Q
    |||||||| |||||||||| |||| ||||| ||||||| ||||   |||| |||| |||||||||||||||||| |||||||| ||||| ||||||||||    
T  27920590 tcaggggacccttctcaaatagataaagatctaagttcatctttggttgtgacaaaggagcttgagaatctagtctccaagaagcatttggctattgaga 27920689  T
Q  198 aattgtctttgttgactgatttccttgttaagcatccttca 238  Q
    | ||||||||||||||||| |||||||||||||||||||||    
T  27920690 acttgtctttgttgactgacttccttgttaagcatccttca 27920730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 30993721 - 30993861
Alignment:
Q  98 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 197  Q
    |||||||| |||||||||| |||||||||||||||||||||||   |||||||| ||||||||||||||||||| ||||||||  ||||||||||||| |    
T  30993721 tcaggggacccttctcaaatagatgaagatttaagttcttctttggttgtcacaggggagcttgagaatctagtctccaagaagtatttagctattgata 30993820  T
Q  198 aattgtctttgttgactgatttccttgttaagcatccttca 238  Q
    | ||||  |||||||| |||||||||||||| |||||||||    
T  30993821 acttgtacttgttgacggatttccttgttaatcatccttca 30993861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 239
Target Start/End: Original strand, 27954559 - 27954700
Alignment:
Q  98 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 197  Q
    |||||||| |||||||||| ||||| |||||||||||||| ||   ||||||||||||||||||| ||| || | ||||| || ||||| ||||||||||    
T  27954559 tcaggggacccttctcaaatagatggagatttaagttcttatttggttgtcacaagggagcttgaaaatataatctccaataagcatttggctattgaga 27954658  T
Q  198 aattgtctttgttgactgatttccttgttaagcatccttcat 239  Q
    | ||||||||||||||||||||||| ||||||||||||||||    
T  27954659 acttgtctttgttgactgatttcctagttaagcatccttcat 27954700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 8538860 - 8538720
Alignment:
Q  98 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 197  Q
    |||||||| |||||||||  |||||||||||||| ||||||||   ||||||||||||||||||| |||||||| |||||||||||||| |||||||| |    
T  8538860 tcaggggacccttctcaattagatgaagatttaatttcttctttggttgtcacaagggagcttgaaaatctagtctccaagaatcatttggctattgata 8538761  T
Q  198 aattgtctttgttgactgatttccttgttaagcatccttca 238  Q
    |  |||| ||||||||  ||||||||||||| |||||||||    
T  8538760 acatgtccttgttgaccaatttccttgttaaccatccttca 8538720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 110 - 237
Target Start/End: Complemental strand, 27430715 - 27430588
Alignment:
Q  110 tctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgt 209  Q
    ||||||| ||||||| |||| ||||| ||||    |||||||| ||| || ||||||||||| |||||||||||||| ||||| ||||| ||||||||||    
T  27430715 tctcaaatagatgaatattttagttcgtctttggctgtcacaaaggaactcgagaatctagtctccaagaatcatttggctatcgagaacttgtctttgt 27430616  T
Q  210 tgactgatttccttgttaagcatccttc 237  Q
    ||||||||||||||||||||||||||||    
T  27430615 tgactgatttccttgttaagcatccttc 27430588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 98 - 234
Target Start/End: Original strand, 11421610 - 11421743
Alignment:
Q  98 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggag---cttgagaatctagtttccaagaatcatttagctattg 194  Q
    |||||||| |||||||||| || |||||||||      ||||||  ||||||||||||||   ||||||||||||||||||||||| ||||| |||||||    
T  11421610 tcaggggacccttctcaaatagttgaagattt------ttcttgggttgtcacaagggaggagcttgagaatctagtttccaagaaccatttggctattg 11421703  T
Q  195 agaaattgtctttgttgactgatttccttgttaagcatcc 234  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  11421704 agaacttgtctttgttgactgaattccttgttaagcatcc 11421743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 28037895 - 28038034
Alignment:
Q  98 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 197  Q
    |||||||| |||||||||| |||  ||| |||||||| |||||   |||||| |  ||| |||||||||||||| || ||||| ||||| |||||||| |    
T  28037895 tcaggggacccttctcaaatagaaaaagctttaagttattctttggttgtcaaagcggaacttgagaatctagtctctaagaagcatttggctattgata 28037994  T
Q  198 aattgtctttgttgactgatttccttgttaagcatccttc 237  Q
    | ||||||||||||||||||||| ||||||||||||||||    
T  28037995 atttgtctttgttgactgatttctttgttaagcatccttc 28038034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 28163032 - 28163170
Alignment:
Q  98 tcaggggaaccttctcaaagagatgaagatttaagttcttctt-gcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgag 196  Q
    |||||||| |||||||||| ||  |||||||| |||||||||| |||| ||||  |||||||||||| | ||||| |||||||| ||||| | |  |||     
T  28163032 tcaggggacccttctcaaaaagtagaagatttcagttcttctttgcat-gtcaagagggagcttgagcaactagtctccaagaagcatttcgattatgat 28163130  T
Q  197 aaattgtctttgttgactgatttccttgttaagcatcctt 236  Q
    || ||||||||||||||||||||| |||||||||||||||    
T  28163131 aacttgtctttgttgactgatttctttgttaagcatcctt 28163170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 28479602 - 28479461
Alignment:
Q  96 tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattga 195  Q
    ||||||| || ||||||||||  |  |||||||||||||||||||   ||||||  || ||||||||| | ||||| |||||||||||||| | |  |||    
T  28479602 tctcaggagacccttctcaaaatgtagaagatttaagttcttctttgcttgtcaagagtgagcttgaggaactagtctccaagaatcatttggattgtga 28479503  T
Q  196 gaaattgtctttgttgactgatttccttgttaagcatccttc 237  Q
    ||| |||||||||||||||| ||||||||||| | |||||||    
T  28479502 gaacttgtctttgttgactgctttccttgttaggaatccttc 28479461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 28508785 - 28508644
Alignment:
Q  96 tctcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattga 195  Q
    ||||||| || ||||||||||  |  |||||||||||||||||||   ||||||  || ||||||||| | ||||| ||||||||| |||| | |  |||    
T  28508785 tctcaggagacccttctcaaaatgtagaagatttaagttcttctttgcttgtcaagagtgagcttgagcaactagtctccaagaattatttggattgtga 28508686  T
Q  196 gaaattgtctttgttgactgatttccttgttaagcatccttc 237  Q
    ||| |||||||||||||||| ||||||||||||| |||||||    
T  28508685 gaacttgtctttgttgactgttttccttgttaagaatccttc 28508644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 17744231 - 17744115
Alignment:
Q  122 gaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttcc 221  Q
    |||||||| ||||||||||   ||||||  |||||||||||  | ||||| |||||||| ||||| | |  |||||| |||||||| ||||||||||||     
T  17744231 gaagatttcagttcttctttgtttgtcaagagggagcttgatcaactagtctccaagaagcatttcgattatgagaacttgtcttttttgactgatttct 17744132  T
Q  222 ttgttaagcatccttca 238  Q
    |||||||||||||||||    
T  17744131 ttgttaagcatccttca 17744115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 19045551 - 19045435
Alignment:
Q  122 gaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttcc 221  Q
    |||||||| ||||||||||   ||||||  |||||||||||  | ||||| |||||||| ||||| | |  |||||| |||||||| ||||||||||||     
T  19045551 gaagatttcagttcttctttgtttgtcaagagggagcttgatcaactagtctccaagaagcatttcgattatgagaacttgtcttttttgactgatttct 19045452  T
Q  222 ttgttaagcatccttca 238  Q
    |||||||||||||||||    
T  19045451 ttgttaagcatccttca 19045435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 28057568 - 28057707
Alignment:
Q  98 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 197  Q
    |||||||  |||||||||| ||  |||||||| ||||||||||   ||||||  |||||||||||| | ||| | |||||||| ||||| | |  |||||    
T  28057568 tcaggggttccttctcaaaaagtagaagatttcagttcttctttgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgaga 28057667  T
Q  198 aattgtctttgttgactgatttccttgttaagcatccttc 237  Q
    |  |||||||||||||||||||| ||||||| ||||||||    
T  28057668 acgtgtctttgttgactgatttctttgttaaacatccttc 28057707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 28067993 - 28068132
Alignment:
Q  98 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 197  Q
    |||||||  |||||||||| ||  |||||||| ||||||||||   ||||||  |||||||||||| | ||| | |||||||| ||||| | |  |||||    
T  28067993 tcaggggttccttctcaaaaagtagaagatttcagttcttctttgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgaga 28068092  T
Q  198 aattgtctttgttgactgatttccttgttaagcatccttc 237  Q
    |  |||||||||||||||||||| ||||||| ||||||||    
T  28068093 acgtgtctttgttgactgatttctttgttaaacatccttc 28068132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 18078976 - 18078836
Alignment:
Q  98 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 197  Q
    ||||||||  ||||||| | ||| |||||||||||||||||||   ||||| | |||||||||||||| ||||| ||  ||||  ||||   |  |||||    
T  18078976 tcaggggactcttctcatatagaagaagatttaagttcttctttgcttgtcgcgagggagcttgagaaactagtctctgagaagtatttgaattatgaga 18078877  T
Q  198 aattgtctttgttgactgatttccttgttaagcatccttca 238  Q
    | || |||||||||||||||||| |||||||| ||||||||    
T  18078876 acttttctttgttgactgatttctttgttaagaatccttca 18078836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 27458477 - 27458432
Alignment:
Q  193 tgagaaattgtctttgttgactgatttccttgttaagcatccttca 238  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||    
T  27458477 tgagaacttgtctttgttgactgatttccttgttaagcacccttca 27458432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 26138885 - 26138821
Alignment:
Q  173 tccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttc 237  Q
    |||||||||||||| | |  || ||| ||||||||||||||||||||| ||||||||||||||||    
T  26138885 tccaagaatcatttggattgtgggaatttgtctttgttgactgatttctttgttaagcatccttc 26138821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 26204365 - 26204229
Alignment:
Q  98 tcaggggaaccttctcaaagagatgaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgaga 197  Q
    |||| ||| |||||||||| ||   |||||||||||||||  ||| |||||| ||| ||||||||| | ||| | |||||||||||||| | |  ||  |    
T  26204365 tcagaggacccttctcaaaaagtacaagatttaagttctt--tgc-ttgtcaaaagtgagcttgagcaactaatctccaagaatcatttggattgtggaa 26204269  T
Q  198 aattgtctttgttgactgatttccttgttaagcatccttc 237  Q
    | || |||||||||||||||||| ||||||||||||||||    
T  26204268 atttttctttgttgactgatttctttgttaagcatccttc 26204229  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 26109974 - 26109937
Alignment:
Q  200 ttgtctttgttgactgatttccttgttaagcatccttc 237  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  26109974 ttgtctttgttgactgatttctttgttaagcatccttc 26109937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 28187144 - 28187181
Alignment:
Q  200 ttgtctttgttgactgatttccttgttaagcatccttc 237  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  28187144 ttgtctttgttgactgatttctttgttaagcatccttc 28187181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 28136724 - 28136839
Alignment:
Q  122 gaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttcc 221  Q
    |||||||||||||||||||   ||||||  || ||||||||| | ||||| |||||||||||||| | |  |||||| || ||| | ||||| | |||||    
T  28136724 gaagatttaagttcttctttgtttgtcaagagtgagcttgagcaactagtctccaagaatcatttggattatgagaacttatctctattgacaggtttcc 28136823  T
Q  222 ttgttaagcatccttc 237  Q
    |||||||  |||||||    
T  28136824 ttgttaaaaatccttc 28136839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 44 - 238
Target Start/End: Original strand, 2075 - 2264
Alignment:
Q  44 aattaattttctagtgctcaaatatgcataaacattatttcatgtactctcatctcaggggaaccttctcaaagagatgaagatttaagttcttcttgca 143  Q
    |||||||||||| ||||| ||||||||||||  |||||| | | |||| |||     || || |||||||||||||||||||||||||||| ||||||      
T  2075 aattaattttcttgtgctaaaatatgcataattattattacctatactttca-----ggtgacccttctcaaagagatgaagatttaagttattcttggg 2169  T
Q  144 ttgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttccttgttaagcatccttca 238  Q
    ||||||||| ||||||   ||||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||    
T  2170 ttgtcacaaaggagctacggaatctagtttccgagaattatttggctattgagaacttgtctttgttgactgatttcctagttaagaatccttca 2264  T

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Target: scaffold0257 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 19507 - 19622
Alignment:
Q  122 gaagatttaagttcttcttgcattgtcacaagggagcttgagaatctagtttccaagaatcatttagctattgagaaattgtctttgttgactgatttcc 221  Q
    |||||||||||||||||||   ||||||  |||||||||||| | ||| | |||||||| ||||| | |  ||||||  ||||||||||||||||||||     
T  19507 gaagatttaagttcttcttcgcttgtcaagagggagcttgagcaactactctccaagaagcatttggattatgagaacatgtctttgttgactgatttct 19606  T
Q  222 ttgttaagcatccttc 237  Q
    ||||||| ||||||||    
T  19607 ttgttaaacatccttc 19622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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