View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_72 (Length: 243)
Name: NF18678_low_72
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_72 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 46629362 - 46629585
Alignment:
| Q |
18 |
acttcatatgtatattccaatggtaattacaatggagtagctgattgaattatcatttgattgtaacat--------tatttgaacatttatgcccgtat |
109 |
Q |
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| T |
46629362 |
acttcatatgtatattccaatggtaattataatggagtagctgattgaattatcatttgattgtaacatacaacatttatttgaacatttatgcccgtat |
46629461 |
T |
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| Q |
110 |
cagtgccttttttctttatatatatcatttgtttctgtcctcactttgcttgtatttgttatacacagatttcaaagtcgtttatggagggcagaatttc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46629462 |
cagtgccttttttctttatatatatcatttgtttctgtcctcactttgcttgtatttgttatacacagatttcaaagtcgtttatggagggcagaatttc |
46629561 |
T |
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| Q |
210 |
tctagaaaaatacatatcttcttt |
233 |
Q |
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|||||||||||||||||||||||| |
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| T |
46629562 |
tctagaaaaatacatatcttcttt |
46629585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 126 - 229
Target Start/End: Original strand, 46637303 - 46637403
Alignment:
| Q |
126 |
tatatatatcatttgtttctgtcctcactttgcttgtatttgttatacacagatttcaaagtcgtttatggagggcagaatttctctagaaaaatacata |
225 |
Q |
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||||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||||||| | |||||| |
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| T |
46637303 |
tatatatataatttgtttcagtcctcactttgcttatattt---atacacagatttcaaagtcgtttatggagggcggaacttctctagaagattacata |
46637399 |
T |
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| Q |
226 |
tctt |
229 |
Q |
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|||| |
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| T |
46637400 |
tctt |
46637403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 46618596 - 46618701
Alignment:
| Q |
125 |
ttatatatatcatttgtttctgtcctcactttgcttgtatttgttatacacagatttcaaagtcgtttatggagggcagaatttctctagaaaaatacat |
224 |
Q |
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||||||||||||| |||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| |||| |||||||||| | |||| |
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| T |
46618596 |
ttatatatatcatatgtttcagtcctcactttacttatattt---atacacagatttcaaagtcgtttatggagggaagaacttctctagaagattacac |
46618692 |
T |
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| Q |
225 |
atcttcttt |
233 |
Q |
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||||||||| |
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| T |
46618693 |
atcttcttt |
46618701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 46176773 - 46176677
Alignment:
| Q |
134 |
tcatttgtttctgtcctcactttgcttgtatttgttatacacagatttcaaagtcgtttatggagggcagaatttctctagaaaaatacatatcttcttt |
233 |
Q |
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| T |
46176773 |
tcatttgcttcagtcctcactttg--tgtatat-ttatactcaggtgtctaagtcatttgtggaggacagaacttctcttgaagaatacatatcttcttt |
46176677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 15769882 - 15769817
Alignment:
| Q |
168 |
ttatacacagatttcaaagtcgtttatggagggcagaatttctctagaaaaatacatatcttcttt |
233 |
Q |
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|||||| ||| |||| ||||| | | ||||||| |||| |||||||||| |||||||||||||||| |
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| T |
15769882 |
ttatactcaggtttctaagtcatatgtggagggaagaacttctctagaagaatacatatcttcttt |
15769817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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