View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_74 (Length: 240)
Name: NF18678_low_74
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 62 - 223
Target Start/End: Original strand, 24733128 - 24733289
Alignment:
| Q |
62 |
cacatactatccaaacattctctttacctatcctttttgctttattaaatcaaaacaaaacagaatgaactctgaaacttattttattctaatgggcatg |
161 |
Q |
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| T |
24733128 |
cacatactatccaaacattctctttacctatcctttttgctttatcaaatcaaaacaaaacagaatgaactctgaaacttattttattctaatgggcatg |
24733227 |
T |
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| Q |
162 |
ttggtggctttagctgcaacgaagtatgaagctttaaaaactagtactaacccatttcaacc |
223 |
Q |
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| T |
24733228 |
ttggtggctttagctgcaacgaagtatgaagctttaaaaactagtactaacccatttcaacc |
24733289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 24694536 - 24694471
Alignment:
| Q |
139 |
cttattttattctaatgggcatgttggtggctttagctgcaacgaagtatgaagctttaaaaacta |
204 |
Q |
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| T |
24694536 |
cttattttattctgatgggtttgttggtgtctttagcttcaactaagtatgaagctttaaacacta |
24694471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 24693450 - 24693385
Alignment:
| Q |
139 |
cttattttattctaatgggcatgttggtggctttagctgcaacgaagtatgaagctttaaaaacta |
204 |
Q |
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| T |
24693450 |
cttattttattttgatgggtttgttggtgaatttagcttcaactaagtatgaagctttaaacacta |
24693385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 24642081 - 24642021
Alignment:
| Q |
139 |
cttattttattctaatgggcatgttggtggctttagctgcaacgaagtatgaagctttaaa |
199 |
Q |
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| T |
24642081 |
cttacttttttctgatgggtttgttggtgactttagcttcaactaagtatgaagctttaaa |
24642021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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