View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_75 (Length: 237)
Name: NF18678_low_75
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_75 |
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| [»] scaffold0472 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5970708 - 5970928
Alignment:
| Q |
1 |
taatcgaagcagtctcattagtaacaccgccagcttccaccacaatccaaatcagatcataaggcacaagcatcaaagaatgcatcacaccagtcaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5970708 |
taatcgaagcagtctcattagtaacaccgccagcttccaccacaatccaaatcagatcataaggcacaagcatcaaagaatgcatcacaccagtcaaatg |
5970807 |
T |
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| Q |
101 |
catcgcttgaaaagtcctcacataagtcggagtcacaacaatcacttttctagggttcttcactccaaacaacaatctctgttcattttgaactctagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5970808 |
catcgcttgaaaagtcctcacataagtcggagtcacaacaatcacttttctagggttcttcactccaaacaacaatctctgttcattttgaactctagag |
5970907 |
T |
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| Q |
201 |
attattccatgcgctttcatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
5970908 |
attattccatgcgctttcatt |
5970928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 39271815 - 39271648
Alignment:
| Q |
6 |
gaagcagtctcattagtaacaccgccagcttccaccacaatccaaatcagatcataaggcacaagcatcaaagaatgcatcacaccagtcaaatgcatcg |
105 |
Q |
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|||||||||||||| || || || |||||||||||||| ||||| | ||||||||| |||||||||||||| |||||||||||||| |||| || | | |
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| T |
39271815 |
gaagcagtctcattcgtcactcctccagcttccaccacgatccacaccagatcatacggcacaagcatcaacgaatgcatcacaccgatcaagtggagct |
39271716 |
T |
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| Q |
106 |
cttgaaaagtcctcacataagtcggagtcacaacaatcacttttctagggttcttcactccaaacaac |
173 |
Q |
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| T |
39271715 |
tctggaacgtcctcacatacgtcggcgtaactgcaataaccgtcctagggttcttcactccaaacaac |
39271648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 54866291 - 54866223
Alignment:
| Q |
41 |
cacaatccaaatcagatcataagg--cacaagcatcaaagaatgcatcacaccagtcaaatgcatcgct |
107 |
Q |
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| T |
54866291 |
cacaatccaaatcagatcataaggtgcacaatcatcaaagaatgcatcacaccactcaaatgcgtcgct |
54866223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0472 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0472
Description:
Target: scaffold0472; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 273 - 180
Alignment:
| Q |
1 |
taatcgaagcagtctcattagtaacaccgccagcttccaccacaatccaaatcagatcataaggcacaagcatcaaagaatgcatcacaccagtcaaat |
99 |
Q |
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||||||||||||| |||| ||||||||| |||||| || |||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |
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| T |
273 |
taatcgaagcagtttcatcagtaacaccaccagct-----cagaatccaaatcagatcataagacacaatcatcaaagaatgcatcacactagtcaaat |
180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 6702531 - 6702463
Alignment:
| Q |
41 |
cacaatccaaatcagatcataaggc--acaagcatcaaagaatgcatcacaccagtcaaatgcatcgct |
107 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
6702531 |
cacaatccaaatcagatcataaggcgcacaatcatcaaagaatgcatcacaccagtcaaatgcgtcgct |
6702463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 17339211 - 17339143
Alignment:
| Q |
41 |
cacaatccaaatcagatcataaggc--acaagcatcaaagaatgcatcacaccagtcaaatgcatcgct |
107 |
Q |
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||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| ||||| |
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| T |
17339211 |
cacaatccaaatcagatcataaggcgcacaatcatcaaaggatgcatcacaccagtcaaatgcgtcgct |
17339143 |
T |
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