View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18678_low_76 (Length: 234)

Name: NF18678_low_76
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18678_low_76
NF18678_low_76
[»] chr3 (11 HSPs)
chr3 (1-234)||(2748702-2748935)
chr3 (1-203)||(5412611-5412813)
chr3 (1-205)||(2797065-2797269)
chr3 (1-208)||(2856037-2856244)
chr3 (1-228)||(2768773-2769000)
chr3 (1-205)||(2790062-2790275)
chr3 (1-228)||(2838810-2839034)
chr3 (1-215)||(2818261-2818475)
chr3 (1-228)||(2758918-2759145)
chr3 (1-224)||(2806965-2807197)
chr3 (1-35)||(2755748-2755782)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-210)||(6377-6586)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 2748702 - 2748935
Alignment:
Q  1 ttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagattgcaaggcaaatcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2748702 ttcgcattgaagatgtcattgatgaataccttcggctaatgcatagggccaatcctcctagatgcggatctttagtcggcaagattgcaaggcaaatcaa 2748801  T
Q  101 aactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2748802 aactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatt 2748901  T
Q  201 tcacacgaacgaggaacttcaagcagcattagca 234  Q
    |||||||||| |||||||||||||||||||||||    
T  2748902 tcacacgaacaaggaacttcaagcagcattagca 2748935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 5412611 - 5412813
Alignment:
Q  1 ttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagattgcaaggcaaatcaa 100  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||  |||||||| | ||||  ||||||||||| |||||||||||||    |||||    
T  5412611 ttcgcattgaagatgtcattgacgaataccatcggctaatgcatagggtcaatcctcttggatgcagatctttagtctgcaagattgcaagcttgatcaa 5412710  T
Q  101 aactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatt 200  Q
    |||||||||||||| |||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5412711 aactttgattccccatcatcagatagcatctgagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatt 5412810  T
Q  201 tca 203  Q
    |||    
T  5412811 tca 5412813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 2797065 - 2797269
Alignment:
Q  1 ttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagattgcaaggcaaatcaa 100  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||  |||| |||||||||||| ||||||||||||| | ||||||    
T  2797065 ttcgcattgaagatgtcattgatgaataccttcagctgatgcatagggcctatcctccgggatgcggatctttagtctgcaagattgcaagtctaatcaa 2797164  T
Q  101 aactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatt 200  Q
    ||| |||||| ||| ||| || ||||||||||| ||| || |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2797165 aacattgatttcccttcaccagatagcatctgagattaagaacattaagatatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatt 2797264  T
Q  201 tcaca 205  Q
    |||||    
T  2797265 tcaca 2797269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 2856244 - 2856037
Alignment:
Q  1 ttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagattgcaaggcaaatcaa 100  Q
    ||||||||||||||||||||||||||||||||||| | || |||||| ||||||||| | || ||||||||||||||  |||| || |||| | ||||||    
T  2856244 ttcgcattgaagatgtcattgatgaataccttcggttgatacatagggccaatcctcatggacgtggatctttagtcaacaaggttacaagccgaatcaa 2856145  T
Q  101 aactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatt 200  Q
    |||||||||||||| |||| | || ||||| || ||||||||||| || || ||||||||||||||||||||||||||  ||||||||||||||||||||    
T  2856144 aactttgattccccatcataaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagccagaggtataactttcaaatt 2856045  T
Q  201 tcacacga 208  Q
    ||||||||    
T  2856044 tcacacga 2856037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2768773 - 2769000
Alignment:
Q  1 ttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagattgcaaggcaaatcaa 100  Q
    ||||||||||||||||||||||||||||||||||| | |  |||||| |||||| ||| ||| | ||||||||| ||  |||||||||||| | ||||||    
T  2768773 ttcgcattgaagatgtcattgatgaataccttcggttgacccatagggccaatcgtcccagacgcggatctttaatcttcaagattgcaagcctaatcaa 2768872  T
Q  101 aactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatt 200  Q
    |||||||| |||||||||| | || ||||  || |||||||||||||| || |||||||||||||||||||||||||| |||||||||| |||||||| |    
T  2768873 aactttgactccccgtcataaaattgcattagagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagcgagaggtatagctttcaaact 2768972  T
Q  201 tcacacgaacgaggaacttcaagcagca 228  Q
    ||||| |||| |||| | |||| |||||    
T  2768973 tcacatgaacaaggatcctcaaacagca 2769000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 2790062 - 2790275
Alignment:
Q  1 ttcgcattgaagatgtcattgatgaataccttcggctaatgcataggac------caatcctcctagatgtgg---atctttagtcggcaagattgcaag 91  Q
    |||||||||||||| |||| ||||||||||||||||| ||||||||| |      ||||||| || ||||  |   ||||||| || |||||||||||||    
T  2790062 ttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgccgtcaatctttattctgcaagattgcaag 2790161  T
Q  92 gcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataac 191  Q
     | |||||||||||||||||||| |||||| ||||||||||| ||| |  |||||||  |||||||||||||||||||||||||||||||||||||||||    
T  2790162 cctaatcaaaactttgattccccatcatcagatagcatctgagattaaaaacattaagatatcaattcgtggaatcaaggaaagaagtgagaggtataac 2790261  T
Q  192 tttcaaatttcaca 205  Q
    ||||||||||||||    
T  2790262 tttcaaatttcaca 2790275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2839034 - 2838810
Alignment:
Q  1 ttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagattgcaaggcaaatcaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||  ||||||||    ||| || | |||||  ||||||    
T  2839034 ttcgcattgaagatgtcattgatgaataccttcgactaatgcatagggccaatcctcctggatgcagatcttta---tgcatgactccaaggttaatcaa 2838938  T
Q  101 aactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatt 200  Q
    ||||||||||||||||||  | || ||||| || ||||| ||||| ||  |  ||| ||  ||||||||| ||||||| |||||||||||||||||||||    
T  2838937 aactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaagcgagaggtataactttcaaatt 2838838  T
Q  201 tcacacgaacgaggaacttcaagcagca 228  Q
    ||| | |||| |||| | ||||||||||    
T  2838837 tcaaatgaacaaggatcctcaagcagca 2838810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 2818261 - 2818475
Alignment:
Q  1 ttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagattgcaaggcaaatcaa 100  Q
    |||||||||||||||||||||||||||||||||   | || |||||||||||| ||||  ||||  ||||||| ||  |||||||| ||||   ||| ||    
T  2818261 ttcgcattgaagatgtcattgatgaataccttcttttgatccataggaccaattctccaggatgcagatctttggtatgcaagattccaagattaatgaa 2818360  T
Q  101 aactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatt 200  Q
     ||||||| ||||||| || | || ||||| || ||||||||||| || || |||||||||||||||||||||||||| |||||||||||||| ||||||    
T  2818361 gactttgactccccgttatgaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagcgagaggtataacttccaaatt 2818460  T
Q  201 tcacacgaacgagga 215  Q
    || || |||| ||||    
T  2818461 tcgcatgaacaagga 2818475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2758918 - 2759145
Alignment:
Q  1 ttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagattgcaaggcaaatcaa 100  Q
    |||||||||||||| | ||||| |||||||||||||| || |||| | ||||||||||| |  | |||||| || ||  ||||||| |||| | ||||||    
T  2758918 ttcgcattgaagatataattgacgaataccttcggctgatccatacggccaatcctcctggtagcggatctgtattcaacaagattacaagcccaatcaa 2759017  T
Q  101 aactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatt 200  Q
    ||||||||||||||||||  | || ||||| || ||||| ||||| ||  |  ||||||  ||||||||||||||||| | |||||||||||||||||||    
T  2759018 aactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactttcaaatt 2759117  T
Q  201 tcacacgaacgaggaacttcaagcagca 228  Q
    ||| | |||| |||| | |||| |||||    
T  2759118 tcaaatgaacaaggatcctcaaacagca 2759145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2806965 - 2807197
Alignment:
Q  1 ttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaa------tcctcctagatg---tggatctttagtcggcaagattgcaag 91  Q
    |||||||||||||| |||| |||||||||| |||||| ||||||| | | ||      ||||||| ||||   |||||||| | ||  ||||||||||||    
T  2806965 ttcgcattgaagatatcatcgatgaataccatcggctgatgcatatggcaaaatccagtcctcctggatgcggtggatcttcattctacaagattgcaag 2807064  T
Q  92 gcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataac 191  Q
     |   ||||||||||||||||||||||||||||||||||| | || |  ||||||||  | ||  |||| ||||||||||||||||||||||||||||||    
T  2807065 cctggtcaaaactttgattccccgtcatcatatagcatctaagatccgagacattaaggtgtcggttcgcggaatcaaggaaagaagtgagaggtataac 2807164  T
Q  192 tttcaaatttcacacgaacgaggaacttcaagc 224  Q
    || ||||||||||| |||| |||| | ||||||    
T  2807165 ttacaaatttcacatgaacaaggatcatcaagc 2807197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2755748 - 2755782
Alignment:
Q  1 ttcgcattgaagatgtcattgatgaataccttcgg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  2755748 ttcgcattgaagatgtcattgatgaataccttcgg 2755782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 6586 - 6377
Alignment:
Q  1 ttcgcattgaagatgtcattgatgaataccttcggctaatgcataggaccaatcctcctagatgtggatctttagtcggcaagattgcaaggcaaatcaa 100  Q
    |||||||||||||||| |||||||||||||||||||| || |||||| |||| |||||| |||| ||||| |||||| ||||||||| ||| | ||||||    
T  6586 ttcgcattgaagatgttattgatgaataccttcggctgatccatagggccaaccctcctggatgcggatcattagtctgcaagattgtaagcctaatcaa 6487  T
Q  101 aactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatt 200  Q
    |||||||||| | |  ||||| ||||||||||| ||||||||||| ||  | |||||||||||||||||||| |||||||| ||||||||||||||||||    
T  6486 aactttgatttctcagcatcagatagcatctgagattcaggacataaagctgtcaattcgtggaatcaaggacagaagtgaaaggtataactttcaaatt 6387  T
Q  201 tcacacgaac 210  Q
    | ||| ||||    
T  6386 ttacatgaac 6377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University