View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_80 (Length: 220)
Name: NF18678_low_80
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 55016790 - 55016589
Alignment:
| Q |
1 |
tttctctatacaacctctcttgaatctcttgatccatcactaaatgaagcaaagcccattcaatggccgttgcgctcgtgtcagtaccagcactgataat |
100 |
Q |
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| T |
55016790 |
tttctctatacaacctctcttgaatctcttgatccatcactaaatgaagcaaagcccattcaatggccgttgcgctcgtgtcagtaccagcactgataat |
55016691 |
T |
|
| Q |
101 |
ctctgacacgagcgtaaccaattcctcgtctcccaatatccctctactaggcacttccaaaccaaacaatgaatccacataagcagcaccaatggcactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55016690 |
ctctgacacgagcgtaaccaattcctcgtctcccaatatccctctactaggcacttccaaaccaaacaatgaatccacataagcagcaccaatggcactc |
55016591 |
T |
|
| Q |
201 |
ac |
202 |
Q |
| |
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|| |
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| T |
55016590 |
ac |
55016589 |
T |
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