View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18678_low_81 (Length: 218)
Name: NF18678_low_81
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_81 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 33 - 218
Target Start/End: Complemental strand, 21471306 - 21471121
Alignment:
| Q |
33 |
acttactccacaaatgaatctcatcaacgaatttagctaatataaaaaattgtacatgtgtgtagtatttacgttgagaaaagcattatgcttaaaaaat |
132 |
Q |
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| T |
21471306 |
acttactccacaaatgaatctcatcaacgaatttagctaatataaaaaattgcacatgtgtgtagtatttacgttgagaaaagcattatgcttaaaaaat |
21471207 |
T |
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| Q |
133 |
ttaagcaaatgaaaaccttactttacgatcacaagccttctttggtatatcttttagatctgtaagaaggtcttcctgctctcttt |
218 |
Q |
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| T |
21471206 |
ttaatcaaatgaaaaccttactttacgatcacaagccttctttggtatatcttttagatctgtaagaaggtcttcctgttctcttt |
21471121 |
T |
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Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 21501444 - 21501232
Alignment:
| Q |
1 |
tcaagcttgtgtggttcatcctttactttaaaacttactccacaaatgaatctcatcaacgaatttagctaatataaaaaattgtacatgtgtgtagtat |
100 |
Q |
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| T |
21501444 |
tcaatcttctgtggttcattctcaactttaaaactgattccacaaatga-tctcttaagaaaatttagctaa----aaaaaatgcacatgtatgtagtat |
21501350 |
T |
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| Q |
101 |
ttacgttgagaaaagcattatgcttaaaaaatttaagcaaatgaaaaccttactttacgatcacaagccttctttggtatatcttttagatctgtaagaa |
200 |
Q |
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| T |
21501349 |
ttacgttgagcaaattattatgattaaaaattttaatcaaatgaaaaacttactttacgatcacaagccttctttggtatatcttttagatctgtaagaa |
21501250 |
T |
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| Q |
201 |
ggtcttcctgctctcttt |
218 |
Q |
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| T |
21501249 |
ggtcttcctgttctcttt |
21501232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 40922660 - 40922608
Alignment:
| Q |
158 |
cgatcacaagccttctttggtatatcttttagatctgtaagaaggtcttcctg |
210 |
Q |
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| T |
40922660 |
cgatcacaagccgcctttggtatatctttaagatctgaaagaaggtcttcctg |
40922608 |
T |
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