View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18678_low_82 (Length: 217)
Name: NF18678_low_82
Description: NF18678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18678_low_82 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 34461282 - 34461451
Alignment:
| Q |
19 |
gtattaatattatagttcaattttctttgtagaaagttgttaaatagtaattagtgttactttaactaatacaaatattcctcctttatcatatgcagtg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34461282 |
gtattaatattatagttcaattttctttgtagaaagttgttaaatagttattagtgttactttaactaatacaaatattcctcctttatcatatgtagtg |
34461381 |
T |
|
| Q |
119 |
gttgtaaacttgtaatgtacctaacttaatttatattccatatacaatccatgcaaaggtagattcaaca |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34461382 |
gttgtaaacttgtaatgtacctaacttaatttatattccatatacaaaccatgcaaaggtagattcaaca |
34461451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University